KATANA: A web-based guide to public databases for Arabidopsis genomic information

• Yano Kentaro

  Kazusa DNA Research Institute

• Dansako Tomoko

  Kazusa DNA Research Institute

• Sakurai Nozomu

  Kazusa DNA Research Institute

• Suzuki Hideyuki

  Kazusa DNA Research Institute

• Shibata Daisuke

  Kazusa DNA Research Institute

抄録

Genomic information of Arabidopsis thaliana can be obtained from various public databases. Given that naming conventions often vary between databases and that the same genes can be annotated differently, we developed a web-based tool, KATANA (Kazusa Arabidopsis thaliana Annotation Abstract; <a href="http://www.kazusa.or.jp/katana/">http://www.kazusa.or.jp/katana/</a>), to guide users searching for Arabidopsis genomic information to the relevant public databases from a single site. The tool contains information and annotations of genes and proteins, gene families, gene ontology (GO) terms, metabolic pathways and gene expression data from the Massively Parallel Signature Sequencing (MPSS) experiments. Given that entries in the tool are hyper-linked to those of the databases, detailed information can be accessed at the original sites. Advanced searches for metabolic pathways and GO terms can also be performed.

収録刊行物

• Ｐｌａｎｔ　Ｂｉｏｔｅｃｈｎｏｌｏｇｙ

  Ｐｌａｎｔ　Ｂｉｏｔｅｃｈｎｏｌｏｇｙ 22 (3), 225-229, 2005

  日本植物バイオテクノロジー学会

キーワード

• <i>Arabidopsis thaliana</i>
• database
• annotation
• gene ontology
• metabolic pathway

詳細情報

• CRID: 1390282679304722176
• NII論文ID: 10028053739
• NII書誌ID: AA11250821
• DOI: 10.5511/plantbiotechnology.22.225
• ISSN: 13476114
• ISSN: 13424580
• NDL書誌ID: 7433128
• Web Site: https://ndlsearch.ndl.go.jp/books/R000000004-I7433128
• 本文言語コード: en
• データソース種別:
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  • NDL
  • Crossref
  • CiNii Articles
• 抄録ライセンスフラグ: 使用不可