<b>Methods for analyzing next-generation sequencing data II. From graphical user interface to command line interface</b>

DOI Web Site 6 References Open Access
  • Sun Jianqiang
    Department of Biotechnology Graduate School of Agricultural and Life Sciences, The University of Tokyo,
  • Tang Min
    Department of Biotechnology Graduate School of Agricultural and Life Sciences, The University of Tokyo,
  • Nishioka Tasuku
    Agricultural Bioinformatics Research Unit Graduate School of Agricultural and Life Sciences, The University of Tokyo.
  • Shimizu Kentaro
    Department of Biotechnology Graduate School of Agricultural and Life Sciences, The University of Tokyo, Agricultural Bioinformatics Research Unit Graduate School of Agricultural and Life Sciences, The University of Tokyo.
  • Kadota Koji
    Agricultural Bioinformatics Research Unit Graduate School of Agricultural and Life Sciences, The University of Tokyo.

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Other Title
  • <b>次世代シーケンサーデータの解析手法 第2 回GUI 環境からコマンドライン環境へ </b>

Abstract

Graphical user interface (GUI) is useful to perform general tasks. Analysis of next-generation sequencing (NGS) data is, however, non-trivial tasks. Many methods dedicated to NGS data have been implemented on Linux system thatprovides a command line interface (CLI) as an analysis environment. Therefore, it is desirable for researchers to analyze NGS data on Linux system. We here show the CLIs on Windows (i.e., Command prompts) and Macintosh (i.e., Terminal) systems in contrast with those GUIs. We also describe some basic commands such as “dir” and “ls.”

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