Direct evidence that the rifamycin polyketide synthase assembles polyketide chains processively

  • Tin-Wein Yu
    Department of Chemistry, Box 351700, University of Washington, Seattle, WA 98195-1700; and School of Pharmacy and Department of Bacteriology, University of Wisconsin, Madison, WI 53706
  • Yuemao Shen
    Department of Chemistry, Box 351700, University of Washington, Seattle, WA 98195-1700; and School of Pharmacy and Department of Bacteriology, University of Wisconsin, Madison, WI 53706
  • Yukiko Doi-Katayama
    Department of Chemistry, Box 351700, University of Washington, Seattle, WA 98195-1700; and School of Pharmacy and Department of Bacteriology, University of Wisconsin, Madison, WI 53706
  • Li Tang
    Department of Chemistry, Box 351700, University of Washington, Seattle, WA 98195-1700; and School of Pharmacy and Department of Bacteriology, University of Wisconsin, Madison, WI 53706
  • Cheonseok Park
    Department of Chemistry, Box 351700, University of Washington, Seattle, WA 98195-1700; and School of Pharmacy and Department of Bacteriology, University of Wisconsin, Madison, WI 53706
  • Bradley S. Moore
    Department of Chemistry, Box 351700, University of Washington, Seattle, WA 98195-1700; and School of Pharmacy and Department of Bacteriology, University of Wisconsin, Madison, WI 53706
  • C. Richard Hutchinson
    Department of Chemistry, Box 351700, University of Washington, Seattle, WA 98195-1700; and School of Pharmacy and Department of Bacteriology, University of Wisconsin, Madison, WI 53706
  • Heinz G. Floss
    Department of Chemistry, Box 351700, University of Washington, Seattle, WA 98195-1700; and School of Pharmacy and Department of Bacteriology, University of Wisconsin, Madison, WI 53706

抄録

<jats:p> The assembly of the polyketide backbone of rifamycin B on the type I rifamycin polyketide synthase (PKS), encoded by the <jats:italic>rifA–rifE</jats:italic> genes, is terminated by the product of the <jats:italic>rifF</jats:italic> gene, an amide synthase that releases the completed undecaketide as its macrocyclic lactam. Inactivation of <jats:italic>rifF</jats:italic> gives a rifamycin B nonproducing mutant that still accumulates a series of linear polyketides ranging from the tetra- to a decaketide, also detected in the wild type, demonstrating that the PKS operates in a processive manner. Disruptions of the <jats:italic>rifD</jats:italic> module 8 and <jats:italic>rifE</jats:italic> module 9 and module 10 genes also result in accumulation of such linear polyketides as a consequence of premature termination of polyketide assembly. Whereas the tetraketide carries an unmodified aromatic chromophore, the penta- through decaketides have undergone oxidative cyclization to the naphthoquinone, suggesting that this modification occurs during, not after, PKS assembly. The structure of one of the accumulated compounds together with <jats:sup>18</jats:sup> O experiments suggests that this oxidative cyclization produces an 8-hydroxy-7,8-dihydronaphthoquinone structure that, after the stage of proansamycin X, is dehydrogenated to an 8-hydroxynaphthoquinone. </jats:p>

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