CiNii Articles - X-ray crystallography

1

Crystal Structure of a Benzyltrimethylammonium Chloride Complex with rac-1,1′-Bi-2-naphthol: The Generation of Weak Interactions by the Influence of a Benzyl Group

MARFO-OWUSU Emmanuel , THOMPSON Amber L.

… The crystal structure of a benzyltrimethylammonium chloride complex with rac-1,1′-bi-2-naphthol has been determined by an X-ray diffraction technique. …

X-ray Structure Analysis Online 37(0), 1-2, 2021

J-STAGE
2

Combined Analysis Based on a Crystalline Sponge Method

OHARA Kazuaki , YAMAGUCHI Kentaro

… The crystalline sponge (CS) method was developed as an X-ray crystallographic molecular structure analysis method that can be performed without the need for crystallization of the analyte. …

Analytical Sciences 37(1), 167-175, 2021

J-STAGE
3

PorA, a conserved C-terminal domain-containing protein, impacts the PorXY-SigP signaling of the type IX secretion system

Yukitake Hideharu , Shoji Mikio , Sato Keiko , Handa Yusuke , Naito Mariko , Imada Katsumi , Nakayama Koji

… X-ray crystallography revealed that PorA has a domain similar to the mannose-binding domain of Escherichia coli FimH, the tip protein of Type 1 pilus. …

Scientific Reports 10(1), 21109, 2020-12-03

IR
4

The Milstein Bipyridyl PNN Pincer Complex of Ruthenium Becomes a Noyori-Type Catalyst under Reducing Conditions

Louise N. Dawe , Morteza Karimzadeh-Younjali , Zengjin Dai , Eugene Khaskin , Dmitry G. Gusev

… The structures of 5 and 6 have been elucidated by NMR spectroscopy and X-ray crystallography. …

Journal of the American Chemical Society 142(46), 19510-19522, 2020-11-09

IR
5

P219L substitution in human D-amino acid oxidase impacts the ligand binding and catalytic efficiency

Rachadech Wanitcha , Kato Yusuke , Abou El-Magd Rabab M. , Shishido Yuji , Kim Soo Hyeon , Sogabe Hirofumi , Maita Nobuo , Yorita Kazuko , Fukui Kiyoshi

The journal of biochemistry 168(5), 557-567, 2020-11
6

Immunodominant proteins P1 and P40/P90 from human pathogen Mycoplasma pneumoniae

Vizarraga David , Kawamoto Akihiro , Matsumoto U. , Illanes Ramiro , Perez-Luque Rosa , Martín Jesus , Mazzolini Rocco , Bierge Paula , Pich Oscar Q. , Espasa Mateu , Sanfeliu Isabel , Esperalba Juliana , Fernandez-Huerta Miguel , Scheffer Margot P. , Pinyol Jaume , Frangakis Achilleas S. , Lluch-Senar Maria , Mori Shigetarou , Shibayama Keigo , Kenri Tsuyoshi , Kato Takayuki , Namba Keiichi , Fita Ignacio , Miyata Makoto , Aparicio David

… Here we report the structure of P1, determined by X-ray crystallography and cryo-electron microscopy, and the X-ray structure of P40/P90. …

Nature Communications (11), 5188, 2020-10-14

IR
7

Site-specific epitope insertion into recombinant proteins using the MAP tag system

Wakasa Ayami , Kaneko Mika K. , Kato Yukinari , Takagi Junichi , Arimori Takao

The journal of biochemistry 168(4), 375-384, 2020-10
8

Negatively Curved Nanographene with Heptagonal and [5]Helicene Units

Zijie Qiu , Sobi Asako , Yunbin Hu , Cheng-Wei Ju , Thomas Liu , Loïc Rondin , Dieter Schollmeyer , Jean-Sébastien Lauret , Klaus Müllen , Akimitsu Narita

… X-ray crystallography confirmed the saddle-shaped structures of intermediate 3 and NG 4. …

Journal of the American Chemical Society 142(35), 14814-14819, 2020-08-18

IR
9

Insights into the evolution of regulated actin dynamics via characterization of primitive gelsolin/cofilin proteins from Asgard archaea

Akıl Caner , Tran Linh T. , Orhant-Prioux Magali , Baskaran Yohendran , Manser Edward , Blanchoin Laurent , Robinson Robert C.

… X-ray structures of these proteins in complex with mammalian actin revealed similar interactions to the first domain of human gelsolin or cofilin with actin. …

Proceedings of the National Academy of Sciences, 117-33, 2020-08-18

IR
10

Exploring the binding pocket of quinone/inhibitors in mitochondrial respiratory complex I by chemical biology approaches

Murai Masatoshi

… Recently, X-ray crystallography and cryo-electron microscopy provided further insights into the structure and functions of the enzyme. …

Bioscience, Biotechnology, and Biochemistry (84), 1322-1331, 2020-07-02

IR
11

Dynamic structural biology based on time-resolved X-ray crystallography at SACLA : Toward "molecular movies" to visualize enzymatic reactions [in Japanese]

久保稔

放射光 : 日本放射光学会誌 = Journal of the Japanese Society for Synchrotron Radiation Research 33(4), 266-270, 2020-07
12

X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii

Ohnishi Yusuke , Muraki Norifumi , Kiyota Daiki , Okumura Hideo , Baba Seiki , Kawano Yoshiaki , Kumasaka Takashi , Tanaka Hideaki , Kurisu Genji

The journal of biochemistry 167(6), 549-555, 2020-06
13

Ordering Phase Transition with Symmetry-Breaking from Disorder over Non-Equivalent Sites: Calorimetric and Crystallographic Study of Crystalline d-Sorbose

山村泰久 , 菱田真史 , 齋藤一弥 , Sakiko Iwagaki , Hiroki Kakuta , Yasuhisa YAMAMURA , Hideki Saitoh , Mafumi HISHIDA , Kazuhiro Fukada , Kazuya SAITO

… Phase transitions in the crystalline state of chiral sorbose were examined using precise heat capacity calorimetry and X-ray crystallography. … The X-ray diffraction at low temperatures established the crystal structure of the lowest temperature phase. …

Crystals 10(5), 361, 2020-05

IR
14

Time-resolved studies of metalloproteins using X-ray free electron laser radiation at SACLA

Suga Michihiro , Shimada Atsuhiro , Akita Fusamichi , Shen Jian-Ren , Tosha Takehiko , Sugimoto Hiroshi

… Background: The invention of the X-ray free-electron laser (XFEL) has provided unprecedented new opportunities for structural biology. … The advantage of XFEL is an intense pulse of X-rays and a very short pulse duration (<10 fs) promising a damage-free and time-resolved crystallography approach. Scope of review: Recent time-resolved crystallographic analyses in XFEL facility SACLA are reviewed. …

Biochimica et Biophysica Acta (BBA) - General Subjects 1864(2), 129466, 2020-02-29

IR
15

Formation of BCBH/BCBCl Four-Membered Rings by Complexation of Boron- and Nitrogen-Substituted Acetylene with Hydro-/Chloroboranes

Kobayashi Akemi , Suzuki Katsunori , Kitamura Ryo , Yamashita Makoto

… The X-ray crystallography revealed the formation of BCBH/BCBCl four-membered rings in the solid state. …

Organometallics 39(3), 383-387, 2020-02-10

IR
16

Influence of alumina air-abrasion for highly translucent partially stabilized zirconia on flexural strength, surface properties, and bond strength of resin cement

Yoshida Keiichi

… Crystalline phase identification was also carried out using X-ray diffraction. …

Journal of Applied Oral Science (28), e20190371, 2020-02-07

IR
17

Progress in surface X-ray crystallography and the phase problem

Tajiri Hiroo

Japanese Journal of Applied Physics 59(2), 020503-020503, 2020-02-01

DOI
18

Dynamic Structural Biology of Proteins Using SACLA [in Japanese]

久保稔

電気学会研究会資料. OQD = The papers of technical meeting on optical and quantum devices, IEE Japan 2020(1-8), 33-35, 2020-01-08
19

Elucidation of Molecular Mechanism of a Selective PPARα Modulator, Pemafibrate, through Combinational Approaches of X-ray Crystallography, Thermodynamic Analysis, and First-Principle Calculations

島野仁 , Mayu Kawasaki , Akira Kambe , Yuta Yamamoto , Sundaram Arulmozhiraja , Sohei Ito , Yoshimi Nakagawa , Hiroaki Tokiwa , Shogo Nakano , Hitoshi SHIMANO

… In this study, we investigate the molecular mechanism behind its novel SPPARMα character through a combination of approaches of X-ray crystallography, isothermal titration calorimetry (ITC), and fragment molecular orbital (FMO) analysis. …

International Journal of Molecular Sciences 21(1), 361, 2020-01

IR
20

Enzymes Involved in Levoglucosan Metabolism by Microbes [in Japanese]

伏信進矢 , 山田千早 , 荒川孝俊 , 北岡本光

応用糖質科学 = Bulletin of applied glycoscience : 日本応用糖質科学会誌 10(2), 103-108, 2020

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