The rpoD1 Gene Product Is a Principal Sigma Factor of RNA Polymerase in Microcystis aeruginosa K-81

  • ASAYAMA Munehiko
    Division of Biotechnology, School of Agriculture, Ibaraki University
  • SUZUKI Hidechika
    Division of Biotechnology, School of Agriculture, Ibaraki University
  • SATO Akio
    Division of Biotechnology, School of Agriculture, Ibaraki University
  • AIDA Tokujiro
    Division of Biotechnology, School of Agriculture, Ibaraki University
  • TANAKA Kan
    Institute of Molecular and Cellular Biosciences, The University of Tokyo
  • TAKAHASHI Hideo
    Institute of Molecular and Cellular Biosciences, The University of Tokyo
  • SHIRAI Makoto
    Division of Biotechnology, School of Agriculture, Ibaraki University

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We performed molecular characterization of the RpoDl protein encoded by the rpoD1 gene isolated from a cyanobacterium, Microcystis aeruginosa K-81. The deduced amino acid sequence (416 aa, 48, 871 Da) of RpoDl exhibited extensive similarity to those of proteins of the eubacterial RpoD family (Escherichia coli σ70 homologs). We overproduced and purified RpoDl (54 kDa) from E. coli. Biological and biochemical analyses suggested that RpoD1 has a function homologous to that of E. coli σ70 as follows: (i) the RpoD1 protein complemented an rpoD mutant of E. coli strain YN543 (rpoD285) and (ii) the heterologous RNA polymerase holoenzyme reconstituted from the E. coli core enzyme and recombinant RpoD1 was specifically transcribed from E. coli promoters. Furthermore, Western blot analysis with antiserum against Synechococcus sp. strain PCC 7942 RpoD1 (a principal sigma factor of the σ70 type) indicated that M. aeruginosa K-81 RpoDl (σA1) is the principal σ factor, which is a major component of the σ subunit on exponential cell growth.

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