Genetic Variation and Phylogeographic Analysis of Native Chicken Populations in Myanmar and Thailand

• Riztyan

  United Graduate School of Agriculture, Kagoshima University, Japan

• Nishida Takao

  Faculty of Veterinary Medicine, Kasetsart University, Thailand

• Rerkamnuaychoke Worawut

  Faculty of Veterinary Medicine, Kasetsart University, Thailand

• Shimogiri Takeshi

  Faculty of Agriculture, Kagoshima University, Japan

• Aye Maw Aye

  United Graduate School of Agriculture, Kagoshima University, Japan

• Kawabe Kotaro

  Frontier Science Research Centre, Kagoshima University, Japan

• Kawamoto Yasuhiro

  Faculty of Agriculture, University of the Ryukyus, Japan

• Okamoto Shin

  Faculty of Agriculture, Kagoshima University, Japan

抄録

Native chickens in Myanmar and Thailand have been being domesticated for generations and yielded a wide variety of chickens. The objective of the research is to analyze the genetic variation and relationships of native chicken populations in Myanmar and Thailand. A total number of 249 genomic DNA samples from a total nine populations including the commercial lines, were genotyped using 98 autosomal SNP markers. The average heterozygosity of each population was in the range of 0.181-0.262. The neighbor-joining trees constructed by pair-wise F_ST estimates corresponded that the native chickens in Myanmar and Thailand were at a distance from the commercial chickens. The STRUCTURE analysis revealed that the nine chicken populations used in this study might be derived from six genetic populations (K=6). The AMOVA showed significant value of F_ST with 79-90% of the total genetic variation found within populations. The F_CT value was significant but accounted for only 4.45% of the total variability among countries. Finally, the mantel test for Isolation by Distance result (r=0.5964; P<0.01) suggested the contribution of geographic distance to the genetic structure of native chicken populations in Myanmar and Thailand.

収録刊行物

• The Journal of Poultry Science

  The Journal of Poultry Science 49 (2), 68-73, 2012

  日本家禽学会

キーワード

• genetic variation
• genetic relationship
• heterozygosity
• native chicken phylogeography

詳細情報

• CRID: 1390001205207574784
• NII論文ID: 10030621160
• NII論文ID: 130004446360
• NII論文ID: 40019232378
• NII書誌ID: AA11564513
• DOI: 10.2141/jpsa.011101
• ISSN: 13490486
• ISSN: 13467395
• NDL書誌ID: 023590548
• Web Site: https://ndlsearch.ndl.go.jp/books/R000000004-I023590548
• Web Site: https://www.jstage.jst.go.jp/article/jpsa/49/2/49_011101/_pdf
• 本文言語コード: en
• データソース種別:
  • JaLC
  • NDL
  • Crossref
  • CiNii Articles
• 抄録ライセンスフラグ: 使用不可