Comparing with Phylogenetic Trees Inferred from cpDNA, ITS Sequences and RAPD Analysis in the Genus Asparagus (Asparagaceae)

• FUKUDA Tatsuya

  Faculty of Agriculture, Kochi University

• SONG In-Ja

  Subtropical Horticulture Research Institute, Jeju National University

• ITO Takuro

  Institute for Advanced Biosciences, Keio University

• NAKAYAMA Hokuto

  Graduate School of Science, University of Tokyo

• HAYAKAWA Hiroshi

  Faculty of Agriculture, Kochi University

• MINAMIYA Yukio

  Faculty of Agriculture, Kochi University

• ARAKAWA Ryo

  Faculty of Agriculture, Kochi University

• Ryo Akira

  Graduate School of Life Sciences, Tohoku University

• YOKOYAMA Jun

  Department of Biology, Faculty of Science, Yamagata University

書誌事項

タイトル別名

• Comparing with Phylogenetic Trees Inferred from cpDNA, ITS Sequences and RAPD Analysis in the Genus <I>Asparagus</I> (Asparagaceae)

抄録

This genus Asparagus (Asparagaceae) includes commercially important species of vegetable as well as some ornamentally or medicinally important species, and it needs molecular markers to conduct precious identification. Therefore, we compared results of phylogenetic analyses based on different molecular approaches for this genus. To reconstruct phylogenetic trees, we used three data sets, sequences of some chloroplast DNA (cpDNA) regions and the internal transcribed spacer (ITS) 1 region, and random amplified polymorphic DNA (RAPD) for seven samples selected from all subgenera in this genus. Both trees of the ITS region and the RAPD analysis have higher resolutions than those of cpDNA sequences. However, the tree of RAPD analysis has low a value of consistency index (CI) due to parallelism of many characters. The tree of ITS1 sequences provided appropriate resolution and a high CI value. Therefore, ITS sequencing is overall the most efficient approach for clarifying the phylogenetic relationship among the species of Asparagus.

収録刊行物

• Ｅｎｖｉｒｏｎｍｅｎｔ　Ｃｏｎｔｒｏｌ　ｉｎ　Ｂｉｏｌｏｇｙ

  Ｅｎｖｉｒｏｎｍｅｎｔ　Ｃｏｎｔｒｏｌ　ｉｎ　Ｂｉｏｌｏｇｙ 50 (1), 13-18, 2012

  日本生物環境工学会

キーワード

• <I>Asparagus</I>
• nrDNA
• <I>pet</I>
• phylogeny

詳細情報

• CRID: 1390001205259693440
• NII論文ID: 10030741679
• NII書誌ID: AA12029220
• DOI: 10.2525/ecb.50.13
• COI: 1:CAS:528:DC%2BC38Xptl2is7c%3D
• ISSN: 18830986
• ISSN: 1880554X
• NDL書誌ID: 023580944
• Web Site: https://ndlsearch.ndl.go.jp/books/R000000004-I023580944
• 本文言語コード: en
• データソース種別:
  • JaLC
  • NDL
  • Crossref
  • CiNii Articles
• 抄録ライセンスフラグ: 使用不可