Phylogenetic Relationships among Dabbling Duck Species in Korea using COI Gene Variations in mtDNA
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- Jin Seon-Deok
- Department of Animal Science and Biotechnology, Chungnam National University, Korea Korea Biodiversity Information Facility Secretariat, National Science Museum, Korea
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- Rashedul Hoque Md.
- Department of Animal Science and Biotechnology, Chungnam National University, Korea
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- Seo Dong-Won
- Department of Animal Science and Biotechnology, Chungnam National University, Korea
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- Kim In-Kyu
- Korea Institute of Environmental Ecology, Korea
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- Jo Cheorun
- Department of Animal Science and Biotechnology, Chungnam National University, Korea
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- Paek Woon-Kee
- Korea Biodiversity Information Facility Secretariat, National Science Museum, Korea
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- Lee Jun-Heon
- Department of Animal Science and Biotechnology, Chungnam National University, Korea
書誌事項
- タイトル別名
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- Phylogenetic Relationships among Dabbling Duck Species in Korea using <i>COI </i>Gene Variations in mtDNA
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抄録
Korea is an important geographical location for wintering dabbling ducks. In order to investigate their relationships, 92 ducks from ten breeds were sampled from nine different geographical areas in Korea. Of these, 38 samples are represented as Mallard (Anas platyrhynchos), Spot-billed (Anas poecilorhyncha zonorhyncha) and domestic (Anas platyrhynchos domesticus) ducks. They are very closely related to commercial duck breeds. The partial (746 and 749 bp) mitochondrial DNA (mtDNA) COI (Cytochrome Oxidase I) gene sequences were obtained and 126 SNPs were identified, which belong to 23 haplotypes. Eighty five Anas and ten Aix genus have been used for phylogenetic analysis. Based on the neighbor-joining (NJ) method, duck species used in this study can be well differentiated, except for the three duck breeds, Mallard, Spot-billed and domestic ducks, where most of the individuals belong to haplotype 12. The highest K2P distance, 0.31, was observed in Spot-billed ducks, with a range of 0.07-10.96 between the species. However, there was no correlation between geographic distance (km) and K2P distance (%) between the species. Based on our results, duck species can be discriminated with COI sequences, except for the three closely related breeds, and this can be effectively used for an appropriate conservation program for the wild duck breeds in Korea.
収録刊行物
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- The Journal of Poultry Science
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The Journal of Poultry Science 49 (3), 163-170, 2012
日本家禽学会
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詳細情報 詳細情報について
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- CRID
- 1390001205206037888
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- NII論文ID
- 130004446369
- 10030948562
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- NII書誌ID
- AA11564513
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- COI
- 1:CAS:528:DC%2BC38XhtlGgt7%2FP
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- ISSN
- 13490486
- 13467395
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- NDL書誌ID
- 023829897
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- 本文言語コード
- en
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- データソース種別
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- JaLC
- NDL
- Crossref
- CiNii Articles
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- 抄録ライセンスフラグ
- 使用不可