jPOSTrepo: an international standard data repository for proteomes

• Okuda, Shujiro

• Watanabe, Yu

• Moriya, Yuki

• Kawano, Shin

• Yamamoto, Tadashi

• Matsumoto, Masaki

• Takami, Tomoyo

• Kobayashi, Daiki

• Araki, Norie

• Yoshizawa, Akiyasu C.

• Tabata, Tsuyoshi

• Sugiyama, Naoyuki

• Goto, Susumu

• Ishihama, Yasushi

Bibliographic Information

Other Title

• jPOSTTrepo: an international standard data repository for proteomes
• Ishihama, jPOSTrepo: an international standard data repository for proteomes
• jPOSTTrepo: an international standard data repository for proteome

Abstract

Major advancements have recently been made in mass spectrometry-based proteomics, yielding an increasing number of datasets from various proteomics projects worldwide. In order to facilitate the sharing and reuse of promising datasets, it is important to construct appropriate, high-quality public data repositories. jPOSTrepo (https://repository.jpostdb.org/) has successfully implemented several unique features, including high-speed file uploading, flexible file management and easy-to-use interfaces. This repository has been launched as a public repository containing various proteomic datasets and is available for researchers worldwide. In addition, our repository has joined the ProteomeXchange consortium, which includes the most popular public repositories such as PRIDE in Europe for MS/MS datasets and PASSEL for SRM datasets in the USA. Later MassIVE was introduced in the USA and accepted into the ProteomeXchange, as was our repository in July 2016, providing important datasets from Asia/Oceania. Accordingly, this repository thus contributes to a global alliance to share and store all datasets from a wide variety of proteomics experiments. Thus, the repository is expected to become a major repository, particularly for data collected in the Asia/Oceania region.

Journal

• Nucleic acids research

  Nucleic acids research 45 (D1), D1107-D1111, 2017-01-04

  Oxford University Press (OUP)

Keywords

• asia
• proteome
• proteomics
• spatial release from masking
• datasets

Details

• CRID: 1050845760781999488
• NII Article ID: 120006353864
• ISSN: 03051048
• ISSN: 13624962
• DOI: 10.1093/nar/gkw1080
• HANDLE: 2433/227553
• PubMed: 27899654
• Web Site: http://academic.oup.com/nar/article-pdf/45/D1/D1107/8846785/gkw1080.pdf
• Text Lang: en
• Article Type: journal article
• Data Source:
  • IRDB
  • Crossref
  • PubMed
  • CiNii Articles
  • KAKEN
  • LSDB Archive