IDENTIFICATION OF GROUP‐ AND STRAIN‐SPECIFIC GENETIC MARKERS FOR GLOBALLY DISTRIBUTED <i>ALEXANDRIUM</i> (DINOPHYCEAE). I. RFLP ANALYSIS OF SSU rRNA GENES<sup>1</sup>

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<jats:title>ABSTRACT</jats:title><jats:p>Two distinct small‐subunit ribosomal RNA genes (SSU rDNAs), termed the “A gene” and “B gene,” were recently found in the toxic dinoflagellate <jats:italic>Alexandrium fundyense</jats:italic> Balech. A restriction fragment length polymorphism (RFLP) assay was developed to rapidly detect the A and B genetic markers. SSU rDNA from 58 cultures with species designations of <jats:italic>A. tamarense</jats:italic> (Lebour) Balech, <jats:italic>A. catenella</jats:italic> (Whedon et Kofoid) Balech, <jats:italic>A. fundyense, A. affine</jats:italic> (Fukuyo et Inoue)Balech, <jats:italic>A. minutum</jats:italic> Halim, <jats:italic>A. lusitanicum</jats:italic> Balech, and <jats:italic>A. andersoni</jats:italic> Balech were screened. These cultures represent toxic and non‐toxic isolates from North America, western Europe, Thailand, Japan, Australia, and the ballast water of several cargo ships. The RFLP assay revealed five distinct groups. Three subdivided the <jats:italic>A. tamarense/catenella/fundyense</jats:italic>“species complex” into clusters defined by geographic origin, not by morphospecies designations. The fourth group consisted of <jats:italic>A. affine</jats:italic>, whereas the fifth group was represented by <jats:italic>A. minutum, A. lusitanicum</jats:italic>, and <jats:italic>A. andersoni</jats:italic>.</jats:p><jats:p>The B gene was only found in <jats:italic>A. tamarense, A. catenella</jats:italic>, and <jats:italic>A. fundyense</jats:italic>, but not in all isolates. However, all North American isolates of this closely related group harbored this gene, and it also was found in some <jats:italic>A. tamarense</jats:italic> from scattered locations in Japan and in the ballast water of one ship that operated exclusively between Japan and Australia. Isolates without the B gene appeared to have only a single class of SSU rDNA. The B sequence was not essential for toxin production, but thus far those organisms harboring it were toxic. The <jats:italic>A. tamarense/catenella/fundyense</jats:italic> complex is composed of genetically distinct populations, within which may exist two or all three of the mophotypically defined species. The B gene is a promising taxonomic and biogeographic marker and may be useful for tracking the regional and/or global dispersal of particular populations.</jats:p>

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