Differential display methods and protocols

著者

• Liang, Peng
• Meade, Jonathan D
• Pardee, Arthur Beck

書誌事項

Differential display methods and protocols

edited by Peng Liang, Jonathan D. Meade, Arthur B. Pardee

（Methods in molecular biology / John M. Walker, series editor, 317）

Humana Press, c2006

2nd ed

注記

Includes bibliographical references and index

収録内容

• Global analysis of gene expression by differential display : a mathematical model / Shitao Yang and Peng Liang
• Automation of fluorescent differential display with digital readout / Jonathan D. Meade ... [et al.]
• Ordered differential display / Mikhail V. Matz and Ella A. Meleshkevitch
• GeneCalling : transcript profiling coupled to a gene database query / Richard A. Shimkets
• High density sampling differential display of prokaryotic mRNAs with RAP-PCR / Dana M. Walters and Pierre E. Rouvière
• Vertical arrays: microarrays of complex mixtures of nucleic acids / Rosana Risques ... [et al.]
• Automated pattern ranking in differential display data analysis / Tero Aittokallio ... [et al.]
• Linking cDNA-AFLP-based gene expression patterns and ESTs / Ling Qin, Pjotr Prins, and Johannes Helder
• Differentially expressed genes associated with hepatitis B virus HBx and MHBs protein function in hepatocellular carcinoma / Dae-Ghon Kim
• Identification of disease markers by differential display : prion disease / Michael Clinton ... [et al.]
• Saturation screening for p53 target genes by digital fluorescent differential display / Yong-Jig Cho ... [et al.]
• Identification of p53-regulated genes by the method of differential display / Yunping Lin, Roger P. Leng, and Samuel Benchimol
• Identification by differential display of IL-24 autocrine loop activated by ras oncogenes / Zhongjia Tan, Mai Wang, and Peng Liang
• Comprehensive analysis of ovarian gene expression during ovulation using differential display / Lawrence L. Espey
• Functional analysis of nocturnin : a circadian clock-regulated gene identified by differential display / Julie E. Baggs and Carla B. Green
• Isolation and characterization of anthocyanin 5-0-glucosyltransferase in perilla frutescens var. crispa by differential display / Mami Yamasaki and Kazuki Saito
• Identification of target genes of a yeast transcriptional repressor / Bernard Mai and Linda L. Breeden
• Detection of an mRNA polymorphism by differential display / Shan Liang ... [et al.]
• Silencing in yeast: identification of Clr4 targets / Sergey V. Ivanov and Alla V. Ivanova
• Identification of mRNA bound to RNA binding proteins by differential display / Anne Carr-Schmid, Xinfu Jiao, and Megerditch Kiledjian

内容説明・目次

内容説明

Since the first edition of this book dedicated to differential display (DD) technology was published in 1997, we have witnessed an explosive interest in studying differential gene expression. The gene-hunting euphoria was initially powered by the invention of DD, which was gradually overtaken by DNA microarray technology in recent years. Then why is there still the need for second edition of this DD book? First of all, DD still enjoys a substantial lead over DNA microarrays in the ISI citation data (see Table 1), despite the h- dreds of millions of dollars spent each year on arrays. This may come as a surprise to many, but to us it implies that many of the DNA microarray studies went unpublished owing to their unfulfilled promises (1). Second, unlike DNA microarrays, DD is an "open"-ended gene discovery method that does not depend on prior genome sequence information of the organism being studied. As such, DD is applicable to the study of all living organisms-from bacteria, fungi, insects, fish, plants, to mammals-even when their genomes are not sequenced. Second, DD is more accessible technically and financially to most cost-conscious "cottage-industry" academic laboratories. So clearly DD still has its unique place in the modern molecular biological toolbox for gene expression analysis.

目次

Part I. Methodologies Global Analysis of Gene Expression by Differential Display: A Mathematical Model Shitao Yang and Peng Liang Automation of Fluorescent Differential Display With Digital Readout Jonathan D. Meade, Yong-jig Cho, Jeffrey S. Fisher, Jamie C. Walden, Zhen Guo, and Peng Liang Ordered Differential Display Mikhail V. Matz and Ella A. Meleshkevitch GeneCalling (R): Transcript Profiling Coupled to a Gene Database Query Richard A. Shimkets High-Density Sampling Differential Display of Prokaryotic mRNAs With RAP-PCR Dana M. Walters and Pierre E. Rouviere Vertical Arrays: Microarrays of Complex Mixtures of Nucleic Acids Rosana Risques, Gaelle Rondeau, Martin Judex, Michael McClelland, and John Welsh Automated Pattern Ranking in Differential Display Data Analysis Tero Aittokallio, Pekka Ojala, Timo J. Nevalainen, and Olli S. Nevalainen Linking cDNA-AFLP-Based Gene Expression Patterns and ESTs Ling Qin, Pjotr Prins, and Johannes Helder Part II. Applications Differentially Expressed Genes Associated With Hepatitis B Virus HBx and MHBs Protein Function in Hepatocellular Carcinoma Dae-Ghon Kim Identification of Disease Markers by Differential Display: Prion Disease Michael Clinton, Gino Miele, Sunil Nandi, and Derek McBride Saturation Screening for p53 Target Genes by Digital Fluorescent Differential Display Yong-Jig Cho, Susanne Stein, Roger S. Jackson II, and Peng Liang Identification of p53-Regulated Genes by the Method of Differential Display Yunping Lin, Roger P. Leng, and Samuel Benchimol Identification by Differential Display of IL-24 Autocrine Loop Activated by Ras Oncogenes Zhongjia Tan, Mai Wang, and Peng Liang Comprehensive Analysis of Ovarian Gene Expression During Ovulation Using Differential Display Lawrence L.Espey Functional Analysis of Nocturnin: A Circadian Clock-Regulated Gene Identified by Differential Display Julie E. Baggs and Carla B. Green Isolation and Characterization of Anthocyanin 5-O-Glucosyltransferase in Perilla frutescens var. crispa by Differential Display Mami Yamazaki and Kazuki Saito Identification of Target Genes of a Yeast Transcriptional Repressor Bernard Mai and Linda L. Breeden Detection of an mRNA Polymorphism by Differential Display Shan Liang, S. Paul Rossby, Peng Liang, Richard C. Shelton, D. Hal Manier, Amitabha Chakrabarti, and Fridolin Sulser Silencing in Yeast: Identification of Clr4 Targets Sergey V. Ivanov and Alla V. Ivanova Identification of mRNA Bound to RNA Binding Proteins by Differential Display Anne Carr-Schmid, Xinfu Jiao, and Megerditch Kiledjian Index

「Nielsen BookData」 より

詳細情報

• NII書誌ID(NCID): BA76030341
• ISBN:
  • 1588293386
• LCCN: 2005006298
• 出版国コード: us
• タイトル言語コード: eng
• 本文言語コード: eng
• 出版地: Totowa, N.J.
• ページ数/冊数: xiii, 319 p.
• 大きさ: 24 cm
• 分類:
  • LCC : QP623.5.M47
  • NLM : W1
  • NLM : QH 450.2
  • DC22 : 572.8
• 件名:
  • LCSH : Messenger RNA -- Laboratory manuals
  • LCSH : Gene expression -- Research -- Methodology
  • LCSH : Polymerase chain reaction
  • LCSH : DNA fingerprinting
  • MESH : Gene Expression Profiling -- methods -- Laboratory Manuals
  • MESH : Gene Expression -- physiology -- Laboratory Manuals
  • MESH : Molecular Biology -- methods -- Laboratory Manuals
  • MESH : Oligonucleotide Array Sequence Analysis -- methods -- Laboratory Manuals
• 親書誌ID:
  • BA10794673