Protein folding protocols
著者
書誌事項
Protein folding protocols
(Methods in molecular biology / John M. Walker, series editor, 350)
Humana Press, c2007
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注記
Includes bibliographical references and index
内容説明・目次
内容説明
Covering experiment and theory, bioinformatics approaches, and state-of-the-art simulation protocols for better sampling of the conformational space, this volume describes a broad range of techniques to study, predict, and analyze the protein folding process. Protein Folding Protocols also provides sample approaches toward the prediction of protein structure starting from the amino acid sequence, in the absence of overall homologous sequences.
目次
Infrared Temperature-Jump Study of the Folding Dynamics of a-Helices and b-Hairpins
Feng Gai, Deguo Du, and Yao Xu
The Use of High-Pressure Nuclear Magnetic Resonance to Study Protein Folding
Michael W. Lassalle and Kazuyuki Akasaka
Characterization of Denatured Proteins Using Residual Dipolar Couplings
Erika B. Gebel and David Shortle
Characterizing Residual Structure in Disordered Protein States Using Nuclear Magnetic Resonance
David Eliezer
Population and Structure Determination of Hidden Folding, Intermediates by Native-State Hydrogen Exchange-Directed Protein Engineering and Nuclear Magnetic Resonance
Yawen Bai, Hanqiao Feng, and Zheng Zhou
Characterizing Protein Folding Transition States Using Y-Analysis
Adarsh D. Pandit, Bryan A. Krantz, Robin S. Dothager, and Tobin R. Sosnick
Advances in the Analysis of Conformational Transitions in Peptides Using Differential Scanning Calorimetry
Werner W. Streicher and George I. Makhatadze
Application of Single Molecule Foerster Resonance Energy Transfer to Protein Folding
Benjamin Schuler
Single Molecule Studies of Protein Folding Using Atomic Force Microscopy
Sean P. Ng, Lucy G. Randles, and Jane Clarke
Using Triplet-Triplet Energy Transfer to Measure Conformational Dynamics in Polypeptide Chains
Beat Fierz, Karin Joder, Florian Krieger, and Thomas Kiefhaber
A Hierarchical Protein Folding Scheme Based on the Building Block Folding Model
Nurit Haspel, Gilad Wainreb, Yuval Inbar, Hui-Hsu (Gavin) Tsai, Chung-Jung Tsai, Haim J. Wolfson, and Ruth Nussinov
Replica Exchange Molecular Dynamics Method for Protein Folding Simulation
Ruhong Zhou
Estimation of Folding Probabilities and F Values From Molecular Dynamics Simulations of Reversible Peptide Folding
Francesco Rao, Giovanni Settanni, and Amedeo Caflisch
PackingRegularities in Biological Structures Relate to Their Dynamics
Robert L. Jernigan and Andrzej Kloczkowski
Intermediates and Transition States in Protein Folding
D. Thirumalai and Dmitri K. Klimov
Thinking the Impossible: How to Solve the Protein Folding Problem With and Without Homologous Structures and Morem
Rita Casadio, Piero Fariselli, Pier Luigi Martelli, and Gianluca Tasco
Index
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