Statistical methods for microarray data analysis : methods and protocols

Bibliographic Information

Statistical methods for microarray data analysis : methods and protocols

edited by Andrei Y. Yakovlev, Lev Klebanov, Daniel Gaile

(Methods in molecular biology / John M. Walker, series editor, v. 972)(Springer protocols)

Humana Press, c2013

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Includes bibliographical references and index

Description and Table of Contents

Description

Microarrays for simultaneous measurement of redundancy of RNA species are used in fundamental biology as well as in medical research. Statistically,a microarray may be considered as an observation of very high dimensionality equal to the number of expression levels measured on it. In Statistical Methods for Microarray Data Analysis: Methods and Protocols, expert researchers in the field detail many methods and techniques used to study microarrays, guiding the reader from microarray technology to statistical problems of specific multivariate data analysis. Written in the highly successful Methods in Molecular Biology (TM) series format, the chapters include the kind of detailed description and implementation advice that is crucial for getting optimal results in the laboratory. Thorough and intuitive, Statistical Methods for Microarray Data Analysis: Methods and Protocols aids scientists in continuing to study microarrays and the most current statistical methods.

Table of Contents

1. What Statisticians Should Know About Microarray Gene Expression Technology Stephen Welle 2. Where Statistics and Molecular Microarray Experiments Biology Meet Diana M. Kelmansky 3. Multiple Hypothesis Testing: A Methodological Overview Anthony Almudevar 4. Gene Selection with the d-sequence MethodXing Qiu and Lev B Klebanov 5. Using of Normalizations for Gene Expression Analysis Peter Bubeliny 6. Constructing Multivariate Prognostic Gene Signatures with Censored Survival Data Derick R. Peterson 7. Clustering of Gene-Expression Data via Normal Mixture Models G.J. McLachlan, L.K. Flack, S.K. Ng, and K. Wang 8. Network-based Analysis of Multivariate Gene Expression Data Wei Zhi, Jane Minturn, Eric Rappaport, Garrett Brodeur, and Hongzhe Li 9. Genomic Outlier Detection in High-throughput Data Analysis Debashis Ghosh 10. Impact of Experimental Noise and Annotation Imprecision on Data Quality in Microarray Experiment Andreas Scherer, Manhong Dai, and Fan Meng 11. Aggregation Effect in Microarray Data Analysis Linlin Chen, Anthony Almudevar and Lev Klebanov 12. Test for Normality of the Gene Expression Data Bobosharif Shokirov

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