Handbook of RNA biochemistry

著者

• Hartmann, Roland K. (Roland Karl)

書誌事項

Handbook of RNA biochemistry

edited by Roland K. Hartmann ... [et al.]

Wiley-VCH, c2014

2nd, completely rev. and enl. ed

• : print : [set]
• v. 1
• v. 2

注記

Previous ed.: 2005

Includes bibliographical references and index

内容説明・目次

内容説明

The second edition of a highly acclaimed handbook and ready reference. Unmatched in its breadth and quality, around 100 specialists from all over the world share their up-to-date expertise and experiences, including hundreds of protocols, complete with explanations, and hitherto unpublished troubleshooting hints. They cover all modern techniques for the handling, analysis and modification of RNAs and their complexes with proteins. Throughout, they bear the practising bench scientist in mind, providing quick and reliable access to a plethora of solutions for practical questions of RNA research, ranging from simple to highly complex. This broad scope allows the treatment of specialized methods side by side with basic biochemical techniques, making the book a real treasure trove for every researcher experimenting with RNA.

目次

VOLUME 1 RNA SYNTHESIS AND DETECTION Enzymatic RNA Synthesis Using Bacteriophage T7 RNA Polymerase Production of RNAs with Homogeneous 5'- and3' -Ends RNA Ligation Northern Blot Detection of Small RNAs Rapid, Non-Denaturing, Large-Scale Purification of In Vitro Transcribed RNA Using Weak Anion-Exchange Chromatography 3'-Terminal Attachment of Fluorescent Dyes and Biotin Chemical RNA Synthesis, Purification, and Analysis Modified RNAs as Tools in RNA Biochemistry STRUCTURE DETERMINATION Direct Determination of RNA Sequence and Modification by Radiolabeling Methods Probing RNA Structure In Vitro with Enzymes and Chemicals Probing RNA Solution Structure by Photocrosslinking: Incorporation of Photoreactive Groups at RNA Termini and Determination of Crosslinked Sites by Primer Extension Terbium(III) Footprinting as a Probe of RNA Structure and Metal Binding Sites PB2+-Induced Cleavage of RNA Identification and Characterization of Metal Ion Coordination Interactions with RNA by Quantitative Analysis of Thiophilic Metal Ion Rescue of Site-Specific Phosphorothioate Modifications Probing RNA Structure and Ligand Binding Sites on RNA by Fenton Cleavage Measuring the Stoichiometry of Magnesium Ions Bound to RNA Nucleotide Analog Interference Mapping and Suppression (NAIM/NAIS): A Combinatorial Approach to Study RNA Structure, Folding, and Interaction with Proteins Nucleotide Analog Interference Mapping (NAIM): Application to the RNase P System Identification of Divalent Metal Ion Binding Sites in RNA/DNA-Metabolizing Enzymes by Fe(II)-Mediated Hydroxyl Radical Cleavage RNA Structure and Folding Analyzed Using Small-Angle X-Ray Scattering Temperature-Gradient Gel Electrophoresis of RNA UV Melting Studies with RNA RNA Crystallization Studying RNA Using Single Molecule Fluorescence Resonance Energy Transfer Atomic Force Microscopy Imaging and Force Spectroscopy of RNA VOLUME 2 RNA GENOMICS & BIOINFORMATICS, GLOBAL APPROACHES Secondary Structure Prediction RNA Secondary Structure Analysis Using Abstract Shapes Screening Genome Sequences for known RNA Genes or Motifs Homology Search for Small Structured Non-Coding RNAs Predict RNA 2D and 3D Structure over the Internet using MC-Tools S2S-Assemble2: A Semi-Automatic Bioinformatics Framework to Study and Model RNA 3D Architectures Molecular Dynamics Simulations of RNA Systems Identification and Characterization of Small Non-Coding RNAs in Bacteria The Identification of Bacterial Non-Coding RNAs through Complementary Approaches Experimental RNomics, a Global Approach to Identify Non-Coding RNAs in Model Organisms, and RNPomics to Analyze the Non-Coding RNP Transcriptome Computational Methods for Gene Expression Profiling Using Next-Generation Sequencing (RNA-Seq) Characterization and Prediction of miRNA Targets Barcoded cDNA Libraries for miRNA Profiling by Next-Generation Sequencing Transcriptome-Wide Identification of Protein Binding Sites on RNA by PAR-CLIP (Photoactivatable-Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation) Global Analysis of Protein-RNA Interactions with Single-Nucleotide Resolution Using iCLIP RNA FUNCTION, RNP ANALYSIS, SELEX, RANi Use of RNA Affinity Matrices for the Isolation of RNA Binding Proteins Biotin-Based Affinity Purification of RNA-Protein Complexes Affinity Purification of Spliceosomal and Small Nuclear Ribonucleoprotein Complexes Study of RNA-Protein Interactions and RNA Structure in Ribonucleoprotein Particles (RNPs) Immunopurification of Endogenous RNAs Associated with RNA Binding Proteins In vivo Protein-RNA Crosslinking in Native Ribonucleoprotein Particles Sedimentation Analysis of Ribonucleoprotein Complexes Identification and Characterization of RNA Binding Proteins through Three-Hybrid Analysis Experimental Identification of MicroRNA Targets Aptamer Selection against Biological Macromolecules: Proteins and Carbohydrates In Vitro Selection against Small Targets SELEX Strategies to Identify Antisense and Protein Target Sites in RNA or hnRNP Complexes Genomic SELEX In vivo SELEX Strategies Gene Silencing Methods Using Vector-Encoded siRNAs or miRNAs Using Chemical Modification to Enhance siRNA Performance Appendix: UV Spectroscopy for the Quantitation of RNA Index

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詳細情報

• NII書誌ID(NCID): BB15332901
• ISBN:
  • 9783527327645
• 出版国コード: gw
• タイトル言語コード: eng
• 本文言語コード: eng
• 出版地: Weinheim
• ページ数/冊数: 2 v. (xlii, 1314 p.)
• 大きさ: 25 cm
• 分類:
  • DC23 : 572.88
• 件名:
  • LCSH : RNA