Agrobacterium protocols

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Bibliographic Information

Agrobacterium protocols

edited by Kan Wang

(Methods in molecular biology / John M. Walker, series editor, v. 1223-1224)(Springer protocols)

Humana Press, c2015

3rd ed

  • v. 1
  • v. 2
  • v. 1 : pbk
  • v. 2 : pbk

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Includes bibliographical references and index

Description and Table of Contents

Volume

v. 2 ISBN 9781493916573

Description

Rapid changes and significant progress have been made in the Agrobacterium field, such as genetically transforming plants for both basic research purposes and agricultural development. In Agrobacterium Protocols, Third Edition, Volumes 1 and 2, a team of leading experts and veteran researchers describe in detail techniques for delivering DNA to plant cells and permanently altering their genomes. This edition emphasizes agricultural crops and plant species with economic values, with updated protocols on 32 plant species and protocols involving 19 new species. Together with the 1st and 2nd editions, these two volumes offer Agrobacterium-mediated genetic transformation protocols for a total of 76 plant species. For a number of important plants such as rice, barley, wheat and citrus, multiple protocols using different starting plant materials for transformation are included. Volume 2 contains 29 chapters with updated techniques for industrial plants, root plants, nuts and fruits, tropic plants, and other important plant species. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Agrobacterium Protocols, Third Edition facilitates the transfer of this rapidly developing technology to all researchers in both fundamental and applied biology.

Table of Contents

Part I Industrial Plants 1 Brassica Rapa Tom Lawrenson, Cassandra Goldsack, Lars Ostergaard, and Penny Hundleby Nee Sparrow 2 Cotton (Gossypium Hirsutum L.) Keerti S. Rathore, Leanne M. Campbell, Shanna Sherwood, and Eugenia Nunes 3 Jatropha (Jatropha Curcas L.) Devendra Kumar Maravi, Shamsher Alam, Purabi Mazumdar, Vaibhav V Goud, and Lingaraj Sahoo 4 Sesame (Sesamum Indicum L.) Sonia Kapoor, Sanjay S. Parmar, Manju Yadav, Darshna Chaudhary, Manish Sainger, Ranjana Jaiwal, and Pawan K. Jaiwal 5 Sunflower (Helianthus Annuus L.) Laura M. Radonic, Dalia M. Lewi, Nilda E. Lopez, H. Esteban Hopp, Alejandro S. Escandon, and Marisa Lopez Bilbao Part II Root Plants 6 Carrot (Daucus Carota L.) Owen S. D. Wally and Zamir K. Punja 7 Cassava (Manihot Esculenta Cranz) Simon E. Bull 8 Potato (Solanum Tuberosum L.) Martha L. Orozco-Cardenas, Venkateswari J. Chetty, and Javier Narvaez-Vasquez 9 Taro (Colocasia Esculenta (L.) Schott) Xiaoling He, Susan C Miyasaka, Maureen MM Fitch, and Yun J Zhu Part III Nuts And Fruits 10 Apricot (Prunus Armeniaca L.) Cesar Petri, Nuria Alburquerque and Lorenzo Burgos 11 Blueberry (Vaccinium Corymbosum L.) Guo-Qing Song 12 Cherry Guo-Qing Song 13 Chestnut, American (Castanea Dentata (Marsh.) Borkh.) Charles A. Maynard, Linda D. Mcguigan, Allison D. Oakes, Bo Zhang, Andrew E. Newhouse, Lilibeth C. Northern, Allison M. Chartrand, Logan R. Will, Kathleen M. Baier, and William A. Powell 14 Chestnut, European (Castanea Sativa) Elena Corredoira, Silvia Valladares, Ana M. Vieitez, and Antonio Ballester 15 Grapevine (Vitis Vinifera L.) Laurent Torregrosa, Sandrine Vialet, Angelique Adiveze, Pat Iocco-Corena, and Mark R. Thomas 16 Melon (Cucumis Melo) Satoko Nonaka and Hiroshi Ezura 17 Peach (Prunus Persica L.) Silvia Sabbadini, Tiziana Pandolfini, Luca Girolomini, Barbara Molesini, and Oriano Navacchi 18 Strawberry (Fragaria X Ananassa) Roberto Cappelletti, Silvia Sabbadinim, and Bruno Mezzetti 19 Walnut (Juglans) Charles A. Leslie, Sriema L.Walawage, Sandra L. Uratsu, Gale Mcgranahan, and Abhaya M. Dandekar Part IV Tropic Plants 20 Citrus Transformation Using Juvenile Tissue Explants Vladimir Orbovic and Jude W. Grosser 21 Citrus Transformation Using Mature Tissue Explants Vladimir Orbovic, Alka Shankar, Michael E. Peeples, Calvin Hubbard, and Janice Zale 22 Coffee (Coffea Arabica L.) Eveline Dechamp, Jean-Christophe Breitler, Thierry Leroy, and Herve Etienne 23 Pineapple [Ananas Comosus (L.) Merr.] Gaurab Gangopadhyay and Kalyan K Mukherjee 24 Sugarcane (Saccharum Spp. Hybrids) Hao Wu and Fredy Altpeter Part V Other Important Plants 25 Hemp (Cannabis Sativa L.) Mistianne Feeney and Zamir K. Punja 26 Orchids (Cymbidium Spp., Oncidium And Phalaenopsis) Chia-Wen Li, Chia-Hui Liao, Xia Huang, and Ming-Tsair Chan 27 Poinsettia (Euphorbia Pulcherrima Willd. Ex Klotzsch) M Ashraful Islam, Tage Thorstensen, and Jihong Liu Clarke 28 Populus Trichocarpa Quanzi Li, Ting-Feng Yeh, Chenming Yang, Jingyuan Song, Zenn-Zong Chen, Ronald R. Sederoff, and Vincent L. Chiang 29 Tall Fescue (Festuca Arundinacea Schreb.) Yaxin Ge and Zeng-Yu Wang
Volume

v. 1 ISBN 9781493916948

Description

Rapid changes and significant progress have been made in the Agrobacterium field, such as genetically transforming plants for both basic research purposes and agricultural development. In Agrobacterium Protocols, Third Edition, Volumes 1 and 2, a team of leading experts and veteran researchers describe in detail techniques for delivering DNA to plant cells and permanently altering their genomes. This edition emphasizes agricultural crops and plant species with economic values, with updated protocols on 32 plant species and protocols involving 19 new species. Together with the 1st and 2nd editions, these two volumes offer Agrobacterium-mediated genetic transformation protocols for a total of 76 plant species. For a number of important plants such as rice, barley, wheat and citrus, multiple protocols using different starting plant materials for transformation are included. Volume 1 details updated techniques available for 18 plant species drawn from cereal crops, legume plants, vegetable plants, and three model plant species: Brachypodium distachyon, Medicago truncatula, and Setaria viridis. It also updates a chapter for vector construction, a step critical to a successful plant transformation process. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Agrobacterium Protocols, Third Edition facilitates the transfer of this rapidly developing technology to all researchers for use in both fundamental and applied biology.

Table of Contents

Part I Vectors And Model Plants 1 Gateway (R) Compatible Plant Transformation Vectors Mark A. Smedley and Wendy A. Harwood 2 Brachypodium Distachyon Jennifer N. Bragg, Amy Anderton, Rita Nieu, And John P. Vogel 3 Medicago Truncatula Transformation Using Cotyledonary Explants Elane Wright and Zeng-Yu Wang 4 Medicago Truncatula Transformation Using Leaf Explants Viviane Cosson, Alexis Eschstruth, and Pascal Ratet 5 Setaria Viridis Joyce Van Eck And Kerry Swartwood Part II Cereal Plants 6 Barley (Hordeum Vulgare L.) Transformation Using Immature Embryos Cornelia Marthe, Jochen Kumlehn and Goetz Hensel 7 Barley (Hordeum Vulgare L.) Transformation Using Embryogenic Pollen Cultures Ingrid Otto, Andrea Muller, and Jochen Kumlehn 8 Maize (Zea Mays L.) Bronwyn Frame, Katey Warnberg, Marcy Main, and Kan Wang 9 Maize, Tropical (Zea Mays L.) Shireen K. Assem 10 Finger Millet [Eleusine Coracana (L.) Gaertn] Stanislaus Antony Ceasar, and Savarimuthu Ignacimuthu 11 Oat (Avena Sativa L.) Sebastian Gasparis and Anna Nadolska-Orczyk 12 Rice, Indica (Oryza Sativa L.) Yukoh Hiei, Yuji Ishida and Toshihiko Komari 13 Rice, Japonica (Oryza Sativa L.) Marcy Main, Bronwyn Frame And Kan Wang 14 Sorghum (Sorghum Bicolor L.) Yuechun Wan And Jeanne Layton 15 Wheat (Triticum Aestivum L.) Transformation Using Immature Embryos Yuji Ishida, Masako Tsunashima, Yukoh Hiei And Toshihiko Komari 16 Wheat (Triticum Aestivum L.) Transformation Using Mature Embryos Eva Medvecka And Wendy A Harwood Part III Legume Plants 17 Alfalfa (Medicago Sativa L.) Chunxiang Fu, Timothy Hernandez, Chuanen Zhou, and Zeng-Yu Wang 18 Clovers (Trifolium Spp.) Samira Rahimi-Ashtiani, Sareena Sahab, Stephen Panter, John Mason, and German Spangenberg 19 Clover, Red (Trifolium Pratense) Michael L. Sullivan and Kenneth H. Quesenberry 20 Cowpea [Vigna Unguiculata (L.) Walp] Ratikanta Behura, Sanjeev Kumar, Bedabrata Saha, Manas Kumar Panda, Mohitosh Dey, Ayan Sadhukhan, Sagarika Mishra, Shamsher Alam, Debee Prasad Sahoo, Twinkle Sugla, Sanjib Kumar Panda, and Lingaraj Sahoo 22 Lentil (Lens Culinaris Medik.) Ufuk Celikkol Akcay, Meral Yucel, Huseyin Avni OEktem 22 Soybean [Glycine Max (L.) Merr.] Diane Luth, Katey Warnburg, and Kan Wang Part IV Legume Plants 23 Brassica Oleracea And B. Napus Penny A.C. Hundleby Nee Sparrow, and Judith A. Irwin 24 Cucumber (Cucumis Sativus L.) and Kabocha Squash (Cucurbita Moschata Duch) Yoshihiko Nanasato and Yutaka Tabei 25 Pepper, Chili (Capsicum Annuum) Jung Min, Sun Hee Shin, En Mi Jeon, Jung Mi Park, Ji Young Hyun,and Chee Hark Harn 26 Pepper, Sweet (Capsicum Annuum) Iris Heidmann And Kim Boutilier 27 Sugar Beet (Beta Vulgaris L.) Hiroyo Kagami, Masayuki Kurata, Hiroaki Matsuhira, Kazunori Taguchi, Tetsuo Mikami, Hideto Tamagake, and Tomohiko Kubo 28 Tomato (Solanum Lycopersicum) Martha L. Orozco-Cardenas, Dora Garcia, and Javier Narvaez-Vasquez
Volume

v. 1 : pbk ISBN 9781493945412

Description

Rapid changes and significant progress have been made in the Agrobacterium field, such as genetically transforming plants for both basic research purposes and agricultural development. In Agrobacterium Protocols, Third Edition, Volumes 1 and 2, a team of leading experts and veteran researchers describe in detail techniques for delivering DNA to plant cells and permanently altering their genomes. This edition emphasizes agricultural crops and plant species with economic values, with updated protocols on 32 plant species and protocols involving 19 new species. Together with the 1st and 2nd editions, these two volumes offer Agrobacterium-mediated genetic transformation protocols for a total of 76 plant species. For a number of important plants such as rice, barley, wheat and citrus, multiple protocols using different starting plant materials for transformation are included. Volume 1 details updated techniques available for 18 plant species drawn from cereal crops, legume plants, vegetable plants, and three model plant species: Brachypodium distachyon, Medicago truncatula, and Setaria viridis. It also updates a chapter for vector construction, a step critical to a successful plant transformation process. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Agrobacterium Protocols, Third Edition facilitates the transfer of this rapidly developing technology to all researchers for use in both fundamental and applied biology.

Table of Contents

Part I Vectors And Model Plants 1 Gateway (R) Compatible Plant Transformation Vectors Mark A. Smedley and Wendy A. Harwood 2 Brachypodium Distachyon Jennifer N. Bragg, Amy Anderton, Rita Nieu, And John P. Vogel 3 Medicago Truncatula Transformation Using Cotyledonary Explants Elane Wright and Zeng-Yu Wang 4 Medicago Truncatula Transformation Using Leaf Explants Viviane Cosson, Alexis Eschstruth, and Pascal Ratet 5 Setaria Viridis Joyce Van Eck And Kerry Swartwood Part II Cereal Plants 6 Barley (Hordeum Vulgare L.) Transformation Using Immature Embryos Cornelia Marthe, Jochen Kumlehn and Goetz Hensel 7 Barley (Hordeum Vulgare L.) Transformation Using Embryogenic Pollen Cultures Ingrid Otto, Andrea Muller, and Jochen Kumlehn 8 Maize (Zea Mays L.) Bronwyn Frame, Katey Warnberg, Marcy Main, and Kan Wang 9 Maize, Tropical (Zea Mays L.) Shireen K. Assem 10 Finger Millet [Eleusine Coracana (L.) Gaertn] Stanislaus Antony Ceasar, and Savarimuthu Ignacimuthu 11 Oat (Avena Sativa L.) Sebastian Gasparis and Anna Nadolska-Orczyk 12 Rice, Indica (Oryza Sativa L.) Yukoh Hiei, Yuji Ishida and Toshihiko Komari 13 Rice, Japonica (Oryza Sativa L.) Marcy Main, Bronwyn Frame And Kan Wang 14 Sorghum (Sorghum Bicolor L.) Yuechun Wan And Jeanne Layton 15 Wheat (Triticum Aestivum L.) Transformation Using Immature Embryos Yuji Ishida, Masako Tsunashima, Yukoh Hiei And Toshihiko Komari 16 Wheat (Triticum Aestivum L.) Transformation Using Mature Embryos Eva Medvecka And Wendy A Harwood Part III Legume Plants 17 Alfalfa (Medicago Sativa L.) Chunxiang Fu, Timothy Hernandez, Chuanen Zhou, and Zeng-Yu Wang 18 Clovers (Trifolium Spp.) Samira Rahimi-Ashtiani, Sareena Sahab, Stephen Panter, John Mason, and German Spangenberg 19 Clover, Red (Trifolium Pratense) Michael L. Sullivan and Kenneth H. Quesenberry 20 Cowpea [Vigna Unguiculata (L.) Walp] Ratikanta Behura, Sanjeev Kumar, Bedabrata Saha, Manas Kumar Panda, Mohitosh Dey, Ayan Sadhukhan, Sagarika Mishra, Shamsher Alam, Debee Prasad Sahoo, Twinkle Sugla, Sanjib Kumar Panda, and Lingaraj Sahoo 22 Lentil (Lens Culinaris Medik.) Ufuk Celikkol Akcay, Meral Yucel, Huseyin Avni OEktem 22 Soybean [Glycine Max (L.) Merr.] Diane Luth, Katey Warnburg, and Kan Wang Part IV Legume Plants 23 Brassica Oleracea And B. Napus Penny A.C. Hundleby Nee Sparrow, and Judith A. Irwin 24 Cucumber (Cucumis Sativus L.) and Kabocha Squash (Cucurbita Moschata Duch) Yoshihiko Nanasato and Yutaka Tabei 25 Pepper, Chili (Capsicum Annuum) Jung Min, Sun Hee Shin, En Mi Jeon, Jung Mi Park, Ji Young Hyun,and Chee Hark Harn 26 Pepper, Sweet (Capsicum Annuum) Iris Heidmann And Kim Boutilier 27 Sugar Beet (Beta Vulgaris L.) Hiroyo Kagami, Masayuki Kurata, Hiroaki Matsuhira, Kazunori Taguchi, Tetsuo Mikami, Hideto Tamagake, and Tomohiko Kubo 28 Tomato (Solanum Lycopersicum) Martha L. Orozco-Cardenas, Dora Garcia, and Javier Narvaez-Vasquez
Volume

v. 2 : pbk ISBN 9781493945443

Description

Rapid changes and significant progress have been made in the Agrobacterium field, such as genetically transforming plants for both basic research purposes and agricultural development. In Agrobacterium Protocols, Third Edition, Volumes 1 and 2, a team of leading experts and veteran researchers describe in detail techniques for delivering DNA to plant cells and permanently altering their genomes. This edition emphasizes agricultural crops and plant species with economic values, with updated protocols on 32 plant species and protocols involving 19 new species. Together with the 1st and 2nd editions, these two volumes offer Agrobacterium-mediated genetic transformation protocols for a total of 76 plant species. For a number of important plants such as rice, barley, wheat and citrus, multiple protocols using different starting plant materials for transformation are included. Volume 2 contains 29 chapters with updated techniques for industrial plants, root plants, nuts and fruits, tropic plants, and other important plant species. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Agrobacterium Protocols, Third Edition facilitates the transfer of this rapidly developing technology to all researchers in both fundamental and applied biology.

Table of Contents

Part I Industrial Plants 1 Brassica Rapa Tom Lawrenson, Cassandra Goldsack, Lars Ostergaard, and Penny Hundleby Nee Sparrow 2 Cotton (Gossypium Hirsutum L.) Keerti S. Rathore, Leanne M. Campbell, Shanna Sherwood, and Eugenia Nunes 3 Jatropha (Jatropha Curcas L.) Devendra Kumar Maravi, Shamsher Alam, Purabi Mazumdar, Vaibhav V Goud, and Lingaraj Sahoo 4 Sesame (Sesamum Indicum L.) Sonia Kapoor, Sanjay S. Parmar, Manju Yadav, Darshna Chaudhary, Manish Sainger, Ranjana Jaiwal, and Pawan K. Jaiwal 5 Sunflower (Helianthus Annuus L.) Laura M. Radonic, Dalia M. Lewi, Nilda E. Lopez, H. Esteban Hopp, Alejandro S. Escandon, and Marisa Lopez Bilbao Part II Root Plants 6 Carrot (Daucus Carota L.) Owen S. D. Wally and Zamir K. Punja 7 Cassava (Manihot Esculenta Cranz) Simon E. Bull 8 Potato (Solanum Tuberosum L.) Martha L. Orozco-Cardenas, Venkateswari J. Chetty, and Javier Narvaez-Vasquez 9 Taro (Colocasia Esculenta (L.) Schott) Xiaoling He, Susan C Miyasaka, Maureen MM Fitch, and Yun J Zhu Part III Nuts And Fruits 10 Apricot (Prunus Armeniaca L.) Cesar Petri, Nuria Alburquerque and Lorenzo Burgos 11 Blueberry (Vaccinium Corymbosum L.) Guo-Qing Song 12 Cherry Guo-Qing Song 13 Chestnut, American (Castanea Dentata (Marsh.) Borkh.) Charles A. Maynard, Linda D. Mcguigan, Allison D. Oakes, Bo Zhang, Andrew E. Newhouse, Lilibeth C. Northern, Allison M. Chartrand, Logan R. Will, Kathleen M. Baier, and William A. Powell 14 Chestnut, European (Castanea Sativa) Elena Corredoira, Silvia Valladares, Ana M. Vieitez, and Antonio Ballester 15 Grapevine (Vitis Vinifera L.) Laurent Torregrosa, Sandrine Vialet, Angelique Adiveze, Pat Iocco-Corena, and Mark R. Thomas 16 Melon (Cucumis Melo) Satoko Nonaka and Hiroshi Ezura 17 Peach (Prunus Persica L.) Silvia Sabbadini, Tiziana Pandolfini, Luca Girolomini, Barbara Molesini, and Oriano Navacchi 18 Strawberry (Fragaria X Ananassa) Roberto Cappelletti, Silvia Sabbadinim, and Bruno Mezzetti 19 Walnut (Juglans) Charles A. Leslie, Sriema L.Walawage, Sandra L. Uratsu, Gale Mcgranahan, and Abhaya M. Dandekar Part IV Tropic Plants 20 Citrus Transformation Using Juvenile Tissue Explants Vladimir Orbovic and Jude W. Grosser 21 Citrus Transformation Using Mature Tissue Explants Vladimir Orbovic, Alka Shankar, Michael E. Peeples, Calvin Hubbard, and Janice Zale 22 Coffee (Coffea Arabica L.) Eveline Dechamp, Jean-Christophe Breitler, Thierry Leroy, and Herve Etienne 23 Pineapple [Ananas Comosus (L.) Merr.] Gaurab Gangopadhyay and Kalyan K Mukherjee 24 Sugarcane (Saccharum Spp. Hybrids) Hao Wu and Fredy Altpeter Part V Other Important Plants 25 Hemp (Cannabis Sativa L.) Mistianne Feeney and Zamir K. Punja 26 Orchids (Cymbidium Spp., Oncidium And Phalaenopsis) Chia-Wen Li, Chia-Hui Liao, Xia Huang, and Ming-Tsair Chan 27 Poinsettia (Euphorbia Pulcherrima Willd. Ex Klotzsch) M Ashraful Islam, Tage Thorstensen, and Jihong Liu Clarke 28 Populus Trichocarpa Quanzi Li, Ting-Feng Yeh, Chenming Yang, Jingyuan Song, Zenn-Zong Chen, Ronald R. Sederoff, and Vincent L. Chiang 29 Tall Fescue (Festuca Arundinacea Schreb.) Yaxin Ge and Zeng-Yu Wang

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