Advances in the understanding of biological sciences using next generation sequencing (NGS) approaches
著者
書誌事項
Advances in the understanding of biological sciences using next generation sequencing (NGS) approaches
Springer, c2015
- : hardcover
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注記
Includes bibliographical references and index
Other editors: Sunil Kumar, Saneyoshi Ueno, Jimmy Kuo, Claudio Varotto
内容説明・目次
内容説明
Provides a global view of the recent advances in the biological sciences and the adaption of the pathogen to the host plants revealed using NGS. Molecular Omic's is now a major driving force to learn the adaption genetics and a great challenge to the scientific community, which can be resolved through the application of the NGS technologies. The availability of complete genome sequences, the respective model species for dicot and monocot plant groups, presents a global opportunity to delineate the identification, function and the expression of the genes, to develop new tools for the identification of the new genes and pathway identification. Genome-wide research tools, resources and approaches such as data mining for structural similarities, gene expression profiling at the DNA and RNA level with rapid increase in available genome sequencing efforts, expressed sequence tags (ESTs), RNA-seq, gene expression profiling, induced deletion mutants and insertional mutants, and gene expression knock-down (gene silencing) studies with RNAi and microRNAs have become integral parts of plant molecular omic's. Molecular diversity and mutational approaches present the first line of approach to unravel the genetic and molecular basis for several traits, QTL related to disease resistance, which includes host approaches to combat the pathogens and to understand the adaptation of the pathogen to the plant host. Using NGS technologies, understanding of adaptation genetics towards stress tolerance has been correlated to the epigenetics. Naturally occurring allelic variations, genome shuffling and variations induced by chemical or radiation mutagenesis are also being used in functional genomics to elucidate the pathway for the pathogen and stress tolerance and is widely illustrated in demonstrating the identification of the genes responsible for tolerance in plants, bacterial and fungal species.
目次
Ch. 1: Expression analysis and genome annotations with RNA sequencing
Masaaki Kobayashi, Hajime Ohyanagi, Kentaro Yano
Ch. 2: The application of Next Generation Sequencing techniques to Plant
Epigenomics
Manu J. Dubin
Ch. 3: Whole genome sequencing to identify genes and QTL in rice
Ryohei Terauchi, Akira Abe, Hiroki Takagi, Muluneh Tamiru, Rym Fekih, Satoshi Natsume, Hiroki Yaegashi, Shunichi Kosugi, Hiroyuki Kanzaki, Hideo Matsumura, Hiromasa Saitoh, Kentaro Yoshida, Liliana Cano, Sophien Kamoun
Ch. 4: Variant calling using NGS data in European aspen (Populus tremula)
Jing Wang, Douglas Scofield, Nathaniel R. Street, Par K. Ingvarsson
Ch. 5: Leafy Spurge Genomics: A Model Perennial Weed To
Investigate Development, Stress Responses, And Invasiveness
David Horvath, James Anderson, Wun Chao, Michael Foley, Munevver Dogramaci
Ch. 6: Utilization of NGS and proteomic-based approaches to gain insights on
cellular responses to singlet oxygen and improve energy yields for bacterial stress adaptation
Roger Greenwell, Mobashar Hussain Urf Turabe Fazil, H P Pandey.
Ch. 7: Experimental evolution and next generation sequencing illuminate the
evolutionary trajectories of microbes
Mario Fares
Ch. 8: Plant carbohydrate active enzyme (CAZyme) repertoires: a comparative
Study
Huansheng Cao, Alex Ekstrom, Yanbin Yin
Ch. 9: Metagenomics of Plant- Microbe Interactions
Riccardo Rosselli, Andrea Squartini
Ch. 10: Genes and trans-factors underlying embryogenic transition in plant
soma-cells
Dhananjay K. Pandey, Bhupendra Chaudhary
Ch. 11: Bioinformatics tools to analyze the proteome and genome data
Ritesh Kumar, Shalini Singh, Vikash Kumar Dubey
Ch. 12: High through-put transcriptome analysis of plant stress responses
Huseyin Tombuloglu, Guzin Tombuloglu
Ch. 13: CNV and structural variation in plants: prospects of NGS
Approaches
Enrico Francia, Nicola Pecchioni, Alberto Policriti, Simone Scalabrin
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