Cell cycle oscillators : methods and protocols

著者
    • Coutts, Amanda S.
    • Weston, Louise (Scientific writer)
書誌事項

Cell cycle oscillators : methods and protocols

edited by Amanda S. Coutts, Louise Weston

(Methods in molecular biology / John M. Walker, series editor, 2329)(Springer protocols)

Humana Press, c2021

2nd ed

  • : hbk

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注記

Includes bibliographical references

内容説明・目次

内容説明

This book brings together a unique collection of protocols that cover novel and specialized techniques as well as updated and improved adaptations of more standard procedures involving the cell cycle and its regulation by oscillatory networks, exploring recent progress in the field from both holistic and reductionist perspectives. The edition provides a space for researchers to highlight and explore the latest developments in molecular biology and biochemical techniques for studying oscillatory networks and to share these across the research community to facilitate further progress. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.Authoritative and up-to-date, Cell Cycle Oscillators: Methods and Protocols, Second Edition serves as an invaluable guide for those new to the field as well as the more experienced scientist. Chapters 19 and 21 are available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.

目次

1. Cell Cycle Control: A System of Interlinking Oscillators Randy Y.C. Poon 2. Substrate Phosphorylation Rates as an In Vivo Measurement of Kinase Activity Matthew P. Swaffer 3. Real Time Monitoring of APC/C-Mediated Substrate Degradation Using Xenopus laevis Egg Extracts Julia Kamenz, Renping Qiao, Qiong Yang, and James E. Ferrell, Jr. 4. Fluorescent Peptide Biosensors for Probing CDK Kinase Activity in Cell Extracts Morgan Pellerano and May C. Morris 5. Phosphatase and Kinase Substrate Specificity Profiling with Pooled Synthetic Peptides and Mass Spectrometry Andrew G. DeMarco, Pete E. Pascuzzi, W. Andy Tao, and Mark C. Hall 6. Whole-Mount Immunostaining for the Identification of Histone Modifications in the S-Phase Nuclei of Arabidopsis Roots Hirotomo Takatsuka and Masaaki Umeda 7. Construction of a Full-Length 3'UTR Reporter System for Identification of Cell-Cycle Regulating MicroRNAs Dominika Kazmierczak and Per Hydbring 8. Purification of Cyclin-Dependent Kinase Fusion Complexes for In Vitro Analysis Mardo Koivomagi 9. Optimizing Cell Synchronization Using Nocodazole or Double Thymidine Block Arif A. Surani, Sergio L. Colombo, George Barlow, Gemma A. Foulds, and Cristina Montiel-Duarte 10. Highly Synchronous Mitotic Progression in Schizosaccharomyces pombe Upon Relief of Transient Cdc2-asM17 Inhibition Pawan Singh, Lenka Halova, and Iain Michael Hagan 11. Elucidating Human Mitosis Using an Anaphase-Like Cell-Free System Danit Wasserman, Sapir Nachum, Meirav Noach-Hirsh, Naomi Auerbach, Evelin Sheinberger-Chorni, Taylor P Enrico, Roxane Lahmi, Michael J. Emanuele, and Amit Tzur 12. EDU (5-Ethynyl-2'-Deoxyuridine)-Coupled-Fluorescence-Intensity Analysis: Determining Absolute Parameters of the Cell Cycle Joao A. Ferreira, Marco Neves, Miguel Alpalhao, Pedro Pereira, Daniela Cunha, Fernando Ferreira, Rene Santus, Ana E. Sousa, and Paulo L. Filipe 13. High-Resolution Analysis of Centrosome Behavior During Mitosis Vanessa Nunes, Margarida Dantas, Joana T. Lima, and Jorge G. Ferreira 14. Assaying Cell Cycle Progression via Flow Cytometry in CRISPR/Cas9-Treated Cells Jonathan M. Geisinger and Tim Stearns 15. Use of Mitotic Protein Kinase Inhibitors and Phospho-Specific Antibodies to Monitor Protein Phosphorylation During the Cell Cycle Isha Nasa, Greg B. Moorhead, and Arminja N. Kettenbach 16. Visualization of Radiation-Induced Cell Cycle Kinetics with a Fluorescent Ubiquitination-Based Cell Cycle Indicator (Fucci) Atsushi Kaida and Masahiko Miura 17. Dynamic Behavior of Inactive X Chromosome Territory During the Cell Cycle as Revealed by H3K27me3-Specific Intracellular Antibody Yuko Sato and Hiroshi Kimura 18. Analyzing Centrioles and Cilia by Expansion Microscopy Dong Kong and Jadranka Loncarek 19. Analysis of Cell Cycle Progression in the Budding Yeast S. cerevisiae Deniz Pirincci Ercan and Frank Uhlmann 20. Application of PALM Super Resolution Microscopy to the Analysis of Microtubule-Organizing Centers (MTOCs) in Aspergillus nidulans Xiaolei Gao, Reinhard Fischer, and Norio Takeshita 21. Live Imaging and Analysis of Cilia and Cell Cycle Dynamics with the Arl13bCerulean-Fucci2a Biosensor and Fucci Tools Melinda Van Kerckvoorde, Matthew J. Ford, Patricia L. Yeyati, Pleasantine Mill, and Richard L. Mort 22. Calorimetric Heat Dissipation Measurements of Developing Zebrafish Embryos Jonathan Rodenfels and Karla M. Neugebauer 23. The Conditional Knockout Analogous System: CRISPR-Mediated Knock Out Together with Inducible Degron and Transcription-Controlled Expression Hoi Tang Ma

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