CiNii Books - Methods in actinobacteriology

This volume details techniques on the study of Isolation, characterization, and exploration of actinobacteria in industrial, food, agricultural, and environmental microbiology. Chapters cover a wide range of basic and advanced techniques associated with research on isolation, characterization and identification of actinobacteria in soil, sediment, estuarine, water, Saltpan, Mangroves, plants, lichens, sea weeds, sea grass, animals-crab, snail, shrimp. Authoritative and cutting-edge, Methods in Actinobacteriology aims to be a useful practical guide to researches to help further their study in this field.

Table of Contents

1. Isolation of Actinobacteria from Soil and Marine Sediment Samples Savitha, T., Ashraf Khalifa, and Sankaranarayanan A 2. Isolation of Actinobacteria from Water Sources Tamalika Chakraborty, Sumana Roy, Dipanjan Mandal, Jeenatara Begum, and Abhijit Sengupta 3. Isolation of Actinobacteria from Deep Sea AparanaKumari,K. V. and Bhaskara Rao 4. Isolation of Actinobacteria from Estuary Ashraf Khalifa and Sankaranarayanan A 5.Isolation of Actinobacteria from Sponges Neethu Kamarudheen and K.V. Bhaskara Rao 6. Isolation of Actinobacteria from Shrimp Shijila Rani A.S., Babu S., Anbukumaran A., Prakash P., Veeramani S., and Ambikapathy V. 7. Isolation of Actinobacteria from Coral Reef Babu S., Shijila Rani A.S., Anbukumaran A, Praksah, P., and Ambikapathy V. 8. Isolation of Actinobacteria from Earthworm Cast Anbukumaran, A.,Shijila Rani, A.S., Ambikapathy, V., Veeramani, S. Shanmgapriya, R. and Babu, S. 9. Isolation of Actinobacteria from Compost Samples Savitha T, Ashraf Khalifa, and Sankaranarayanan A 10. Isolation of Gut Actinobacteria from Fecal and Tissue Samples Priyanka Sarkar 11. Isolation of Gut Actinobacteria from Termites Malavika S., Sahana Kranthi, Shishira Rao H. S., Shreyanka S. Moily, and Martin Paul A 12. Isolation of Gut Actinobacteria from Fishes S. Thejaswini, Sruthy Jojy, Aditi Vijayan, and Martin Paul A 13. Isolation of Actinobacteria from Mangrove Plants Babu S., Anbukumaran A., Ambikapathy V., Veeramani S., Shijila Rani A.S., and Prakash, P 14. Isolation of Actinobacteria from Seaweeds Apsara S. Babu and K. V. Bhaskara Rao 15. Isolation of Actinobacteria from Hills Veerapagu M, Jeya KR, and Sankaranarayanan A 16. Isolation of Endophytic Actinobacteria from Flowers, Fruits, and Seeds of Higher Plants Jayanthi.D, Martin Paul.A, and Leena Sebastian 17. Isolation of Actinobacteria from Desert Soils Ashraf Khalifa and Sankaranarayanan, A. 18. Isolation of Epiphytic Actinobacteria from Rhizosphere of Spermatophytes Shravya.S, Meghana.S.J ,and Jayanthi.D 19. Isolation of Epiphytic Actinobacteria from Lichens Shabeena Banu M.S., Nargis Begum T., G. Vinothini, D.Dhanasekaran, and Thajuddin N. 20. Isolation of Endophytic Actinobacteria from Lichens Shabeena Banu M.S., Nargis Begum T., D. Dhanasekaran, and Thajuddin N. 21. Isolation of Psychrophilic and Psychrotolerant Actinobacteria Manigundan.K, B. Abirami, V. Gopikrishnan, M. Radhakrishnan, and P.V. Bhaskar 22. Isolation of Halophilic Actinobacteria from different habitats Martin Paul, A. and Jayanthi, D. 23. Isolation of Thermophilic Actinobacteria from Different Habitats Pranjali Chole, Lokesh Ravi, and Kannabiran Krishnan 24. Isolation of Stone Dwelling Actinobacteria Shabari Girish, Lokesh Ravi, and Kannabiran Krishnan 25. Cultivation Techniques of Rare Actinobacteria Ramasamy Vijayakumar, Durairaj Thirumurugan, Alagappan Cholarajan, and Suresh Selvapuram Sudalaimuthu Raja 26. Chemo-taxonomical Characterization of Actinobacteria Ramasamy Vijayakumar and Suresh S.S. Raja 27. Application of Bioinformatic Tools for Phylogenetic Analysis Manigundan.K.,Jerrine Joseph, M. Radhakrishnan, Mary Shamya, and Wilson Aruni 28. Methods for Whole-genome Analysis of Actinobacteria through Bioinformatics Approaches Indrani Sarkar, Gargi Sen, and Arnab Sen 29. Nanopore Based Long Read Sequencing Technology to Obtain Highly Contiguous Whole Genome Sequence of Actinobacterial Genomes like Streptomyces sp.. Sankaranarayanan Gomathinayagam, Loganathan Karthik, and KodiveriMuthukaliannan Gothandam 30. Mining genomes of Actinobacteria Sushant Parab, Davide Cora, and Federico Bussolino 31. Comparative genomics of Actinobacteria Sushant Parab,Davide Cora, and Federico Bussolino 32. Biosynthetic Gene Cluster Analysis in Micromonospora Species Using Antismash: Secondary Metabolite Genome Mining Pipeline Manickasamy Mukesh Kumar, Narayanan Rajagopal, and Dhanasekaran Dharumadurai 33. Biosynthetic Gene Cluster Analysis in Actinobacterial Genera Streptomyces spp. Marketa Macho, Daniela Ewe, Vishal Ahuja, Jihen Thabet, Avik Banerjee, Kumar Saurav, and Subhasish Saha 34. PCR based Determination of Secondary Metabolite Genes in Actinobacterial Cultures K. Manigundan, B. Abirami, V. Gopikrishnan, Jerrine Joseph, and M. Radhakrishnan 35. Molecular Mass Determination of Bacteriocin by SDS-PAGE analysis Santhosh Arul M,.Jayashankar, and HaripriyaDayalan 36. MALDI-TOF Analysis of Actinobacterial Peptides with Respect to MASCOT Database Shanmugaraj Gowrishankar, Arumugam Kamaladevi, and Shunmugiah Karutha Pandian 37. Protocols for Preclinical Evaluation and Molecular Docking of Antimicrobial Compounds from Streptomyces sp.- Drug Likeliness Evaluation, ADME-Toxicity Investigation, Docking modes between the Ligand and the target Enzyme and Active Site Prediction Anirudh Sreenivas B.K, Akshaya B, Lokesh Ravi, and Kannabiran Krishnan 38. Energy-based Pharmacophore Hypothesis Combined with Molecular Simulation Protocol for The Screening Of Bioactive Compounds From the Class of Actinobacteria Thirunavukkarasu Muthu Kumar and KaruppasamyRamanathan 39. Receptor cavity-based approach combined with Autodock protocol for the screening of antiviral compounds from Streptomyces sp. K. Rohini, and V. Shanthi 40. Pharmacophore Based Hypothesis Combined with Molecular Docking Protocol for the Screening Of Anti-Cancer Compounds from Streptomyces sp. S. Saranyadevi, R. Priyanka and V. Shanthi 41. Methods of Identification and Validation of Drug Target Jerrine Joseph, M. Radhakrishnan, K. Manigundan,V. Gopikrishnan, Mary Shamya, and Wilson Aruni 42. Transcriptome profiles of Streptomyces sp. Sushant Parab, Davide Cora, and Federico Bussolino 43. Culture of Actinobacteria, Isolation, and Characterization of their Bioactive Compounds Charles SanthanarajuVairappan 44. Miniaturized Production of Bioactive Extracts from Actinobacteria B. Abirami, M. Radhakrishnan, K. Manigundan, Jerrine Joseph, V. Gopikrishnan, and R. Balagurunathan 45. Screening, Characterization, and Identification of Antibacterial Compounds From Actinobacteria Savitha, T., Ashraf Khalifa, and Sankaranarayanan A 46. Isolation, Identification, and Screening of Polyene Antifungal Compound Producing Streptomyces sampsonii MDCE7 from agroforestry soil Radhakrishnan Srinivasan and Varadharajan Mohan 47. Screening of Actinobacterial Cultures for Antimycobacterial Activity using Mycobacterium smegmatis Ramachandran Chelliah and Deog-Hwan Oh 48. Screening of Actinobacterial Extracts/Compounds for Antimycobacterial Activity by Luciferase Reporter Phage (LRP) Assay Shuai Wei,Shucheng Liu, Ramachandran Chelliah, and Deog-Hwan Oh 49. Screening of Actinobacteria for Anti-TB Activity by MicroplateAlamarBlue Assay (MABA) Shuai Wei, Shucheng Liu, Ramachandran Chelliaha, nd Deog-Hwan Oh 50. Screening of Actinobacteria for anti-TB Activity by Agar Dilution Assay Ramachandran Chelliah and Deog-Hwan Oh 51. Antiplasmodial activity of Halophilic Actinobacteria Dharumadurai Dhanasekaran and Saravanan Karthikeyan 52. An invitroAntiamoebic Activity of Actinobacteria KarthiyayiniBalakrishnan, Dhanasekaran Dharumadurai, Thirumurugan Ramasamy, and Muthuselvam Manickam 53. Screening for Antiviral Activity: MTT Assay Ramachandran Chelliah, Fazle Elahi, and Deog-Hwan Oh 54. Screening for Anticancer Activity: 3-(4,5-Dimethylthiazol-2-yl)-2,5-Diphenyltetrazolium (MTT) Assay Ramachandran Chelliah and Deog-Hwan Oh 55. Screening for Anticancer Activity: Dual Staining Method Ramachandran Chelliah and Deog-Hwan Oh 56. Screening for Anticancer Activity: Neutral Red Uptake Assay Ramachandran Chelliah and Deog-Hwan Oh 57. Screening for Anticancer Activity: Lactic Acid Dehydrogenase Assay Ramachandran Chelliah and Deog-Hwan Oh 58. Screening for Anticancer Activity: DNA Fragmentation Assay InamulHasan Madar, Ghazala Sultan, Ramachandran Chelliah, and Deog-Hwan Oh 59. Screening for Anticancer Activity: Trypan Blue Exclusion Assay InamulHasan Madar, Ghazala Sultan, Ramachandran Chelliah, and Deog-Hwan Oh 60. In vitro Evaluation of Antimitotic Properties Of Actinobacterial Extracts Using Onion Root Tip Assay Gopikrishnan. V., M. Radhakrishnan, K. Manigundan, T. Shanmugasundaram, and Jerrine Joseph 61. Screening for Antioxidant Activity: Diphenylpicrylhydrazine (DPPH) Assay Momna Rubab, Ramachandran Chelliah and Deog-Hwan Oh 62. Screening for Antioxidant Activity: Nitric Oxide Scavenging Assay Ramachandran Chelliah, Eric Banan-MwineDaliri, and Deog-Hwan Oh 63. Screening for Antioxidant Activity: Metal Chelating Assay Ramachandran Chelliah and Deog-Hwan Oh 64. Screening for Antioxidant Activity: Total Antioxidant Assay Ramachandran Chelliah, Eric Banan-MwineDaliri, and Deog-Hwan Oh 65. Screening for Antioxidant Activity: Hydrogen Peroxide Scavenging Assay Ramachandran Chelliah, Eric Banan-MwineDaliri, and Deog-Hwan Oh 66. In vitro Evaluation Of Actinobacterial Extracts For Anti Inflammatory Properties B. Abirami, K. Manigundan, Mary Shamya, Jerrine Joseph, S. Shanmugasundaram, and M. Radhakrishnan 67. Screening and production of anti freeze Proteins from Actinobacteria B. Abirami, M. Radhakrishnan, K. Manigundan, V. Gopikrishnan1, S.T. Somasundaram2, and P.V. Bhaskar 68. In vitro Evaluation of Actinobacterial Extracts for Immunomodulatory Properties B. Abirami, K. Manigundan, M. Radhakrishnan, V. Gopikrishnan, Jerrine Joseph, T. Shanmugasundaram, and T. Somasundaram 69. Screening of Actinobacteria for Enzyme Inhibitor Activity Ramachandran Chelliah, Eric Banan-MwineDaliri, and Deog-Hwan Oh 70. Screening of Actinobacteria for Quorum Sensing Inhibition Ramachandran Chelliah, Eric Banan-MwineDaliri, and Deog-Hwan Oh 71. Screening of Actinobacterial Extracts for Anti-biofilm Activity Ramachandran Chelliah, Eric Banan-MwineDaliri, and Deog-Hwan Oh 72. Screening of Actinobacteria for Microbial Induced Calcium Precipitation (MICP) K. Manigundan, B. Abirami, V. Gopikrishnan, and M. Radhakrishnan 73. Immobilization of Actinobacterial Cells - Sodium Alginate and Calcium Chloride Method Gopikrishnan, V., K. Manigundan, B. Abirami, and M. Radhakrishnan 74. Production of Actinobacteria Amylase by Fermentation in Solid State Using Residues Of Licuri Palm (Syagruscoronata) Milena Santos Aguiar, Rafael Resende Maldonado, Andrea Limoeiro Carvalho, and Elizama Aguiar-Oliveira 75. Production Of Lipase By Actinobacteria IsabelyFernanda Pizarro, HandrayFernandes de Souza, Janainados Santos Ferreira, Rafael Resende Maldonad, and Eliana Setsuko Kamimura 76. Isolation And Cultivation Of Actinobacteria By Submerged Fermentation For The Production Of Keratinase Rafael Resende Maldonado, TaisRosangelaCorreia Souza, Simone Kubeneck, Elizama Aguiar-Oliveira, and Helen Treichel 77. Screening of Cellulase from Actinobacteria Varsha N Swamy, M A Haneen, and M.Jayashankar 78. Screening of Pectinase from Actinobacteria M A Haneen, M.Jayashankar, And Varsha N Swamy 79. Screening of Protease from Actinobacteria AshwithaGopal ,Varsha N Swamy,Santhosh Arul, and M.Jayashankar 80. Screening and analysis of Actinobacterial Bioherbicides For Weed Management Prem Anand K and Suthindhiran K 81. In vitro Assessment of Actinobacteria for Survivability Under Simulated Gastro-Intestinal Transit G.Vinothini, M.S. ShabeenaBanu, S. Seema, and D.Dhanasekaran q82. In vitro Assessment of Actinobacteria for Survivability Under Simulated Gastro-Intestinal Transit G.Vinothini, M.S. ShabeenaBanu, S. Seema, and D.Dhanasekaran 83. Screening of Actinobacterial Probiotics by Anti-Pathogenic Activity Test Peng Chen, Zhongkun Zhou, Yunhao Ma,Rentao Zhang, Mengze Sun 84. Screening and Analysis of Probiotic Actinobacteria in Poultry Farming Monica Roberta Mazalli and Rafael Resende Maldonado 85. Vitamin B12 Producing Actinobacteria as Probiotics for Poultry Production Firdosh Shah and Mitesh Dwivedi 86. Qualitative and Quantitative Estimation of Phosphate Solubilizing Actinobacteria Shreya Desaiand NatarajanAmaresan 87. Estimation of Nitrogen Production by Actinobacteria Shreya Desaiand NatarajanAmaresan 88. Screening of Actinobacteria for Siderophore Production Caroline Mercy Andrew Swamidoss, Ramachandran Chelliah, and Deog-Hwan Oh 89. Isolation and Screening of Symbiotic Actinobacteria From Root Nodules of Actinorhizal plant Casuarina sp Dharumadurai Dhanasekaran and Saravanan Karthikeyan 90. Biocontrol Activity of Actinobacteria Against Plant Pathogens Shreya Desaiand NatarajanAmaresan 91. An In vitro nematicidalactivity ofactinobacteria- Juvenile mortality and Egg hatching inhibition Vijayakumar Vishnu Raja and DharumaduraiDhanasekaran 92. Estimation of Auxin Production by Actinobacteria Shreya Desaiand NatarajanAmaresan 93. Screening of Actinobacteria for Mosquitocidal Activity Caroline Mercy Andrew Swamidoss, Ramachandran Chelliah, and Deog-Hwan Oh 94. Extraction, Characterization, and Identification of Odorous Metabolites from Streptomyces Dharumadurai Dhanasekaran, Saravanan Karthikeyan, Saravanan Chandraleka, Govindhan Sivaranjani, and Selvanathan Latha 95. Screening of Actinobacteria for Biosurfactant Production Ramachandran Chelliah, Eric Banan-MwineDaliri, and Deog-Hwan Oh 96. Optimization and Characterization of Biosurfactant from Streptomyces Vishal Ahuja, Marketa Macho, Jihen Thabet, Avik Banerjee, Daniela Ewe, Subhasish Saha, and Kumar Saurav 97. Production of Vitamin B12from Streptomyces species Camil Rex M,Akshaya B, Lokesh Ravi, and Kannabiran Krishnan 98. Screening of Microbes for the Production of Pigment (Melanin) Ramachandran Chelliah and Deog-Hwan Oh 99. Exploration and Characterization ofMelanin Pigment Produced by Actinomycetes Puja Gupta, Madangchanok imchen, and Ranjith Kumavath 100. Isolation and Production of Prodigiosin Pigments from Streptomyces spp. Leena Sebastian, Martin Paul, A., and Jayanthi, D. 101. Aerobic and Anaerobic Decolourization of Textile Dyes Using Actinobacteria Ramasamy Vijayakumar and Suresh S.S. Raja 102. Bioleaching of heavy metals from e-waste using actinobacteria Gopikrishnan, V., K. Manigundan, PR. Meganathan, and M. Radhakrishnan 103. Biosynthesis and Characterization of Silver Nanoparticles From Actinobacteria Vimala. R.T.Va,Rajivgandhi. Gb,d,S. Sridharana,Jayapriya. Mc,Ramachandran. Gd, Chenthis Kanisha. Cd, Manoharan. Nd,Wen-Jun Lib 104. Biosynthesis and Characterization of Gold Nanoparticles from Actinobacteria Vimala. R.T.V, Rajivgandhi. G, S. Sridharan, Jayapriya. M, Ramachandran. G, Chenthis Kanisha. C, Manoharan. N, Wen-Jun Li 105. Antimicrobial Activity of Extracellular Green-Synthesized Nanoparticles By Actinobacteria Vimala. R.T.V, Rajivgandhi. G, S. Sridharan, Jayapriya. M, Ramachandran. G, Chenthis Kanisha. C, Manoharan. N, and Wen-Jun Li 106. Antibiofilm Activity of Extracellular Green-Synthesized Nanoparticles By Actinobacteria Vimala. R.T.V, Rajivgandhi. G, S. Sridharan, Jayapriya. M, Ramachandran. G, Chenthis Kanisha. C, Manoharan. N, Wen-Jun Li 107. Cytotoxic Activity of Extracellular Green Synthesized Nanoparticles by Actinobacteria Vimala. R.T.V, Rajivgandhi. G, S. Sridharan, Jayapriya. M, Ramachandran. G, Chenthis Kanisha. C, Manoharan. N, and Wen-Jun Li 108. Sporicidal Activity of Extracellular Green-Synthesized Nanoparticles by Actinobacteria Vimala. R.T.V, Rajivgandhi. G, S. Sridharan, Jayapriya. M, Ramachandran. G, Chenthis Kanisha. C, Manoharan. N, and Wen-Jun Li

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