Bibliographic Information

Plant proteomics : methods and protocols

edited by Jesus V. Jorrin-Novo ... [et al.]

(Methods in molecular biology / John M. Walker, series editor, 2139)(Springer protocols)

Humana Press, c2020

3rd ed

Available at  / 1 libraries

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Note

Other editors: Luis Valledor, Mari Angeles Castillejo, Maria-Dolores Rey

Previous ed.: 2014

Includes bibliographical references and indexes

Contents of Works

  • What is new in (plant) proteomics methods and protocols: the 2015-2019 quinquennium / Jesus V. Jorrin-Novo
  • Multiple biomolecule isolation protocol compatible with mass spectrometry and other high-throughput analyses in microalgae / Francisco Colina, María Carbó, Ana Alvarez, Mónica Meijón, María Jesús Cañal, and Luis Valledor
  • Protein interaction networks: functional and statistical approaches / Mónica Escandón, Laura Lamelas, Víctor Roces, Víctor M. Guerrero-Sanchez, Mónica Meijón, and Luis Valledor
  • Specific protein database creation from transcriptomics data in nonmodel species: holm oak (Quercus ilex L.) / Víctor M. Guerrero-Sanchez, Ana M. Maldonado-Alconada, Rosa Sánchez-Lucas, and Maria-Dolores Rey
  • Subcellular proteomics in conifers: purification of nuclei and chloroplast proteomes / Laura Lamelas, Lara García, María Jesús Cañal, and Mónica Meijón
  • Apoplastic fluid preparation from Arabidopsis thaliana leaves upon interaction with a nonadapted powdery mildew pathogen / Ryohei Thomas Nakano, Nobuaki Ishihama, Yiming Wang, Junpei Takagi, Tomohiro Uemura, Paul Schulze-Lefert, and Hirofumi Nakagami
  • Shotgun proteomics of plant plasma membrane and microdomain proteins using nano-LC-MS/MS / Daisuke Takahashi, Bin Li, Takato Nakayama, Yukio Kawamura, and Matsuo Uemura
  • A protocol for the plasma membrane proteome analysis of rice leaves / Ravi Gupta, Yu-Jin Kim, and Sun Tae Kim
  • Isolation, purity assessment, and proteomic analysis of endoplasmic reticulum / Xin Wang and Setsuko Komatsu
  • Dimethyl labeling-based quantitative proteomics of recalcitrant cocoa pod tissue / Yoel Esteve-Sánchez, Jaime A. Morante-Carriel, Ascensión Martínez-Márquez, Susana Sellés-Marchart, and Roque Bru-Martinez
  • Quantitative profiling of protein abundance and phosphorylation state in plant tissues using tandem mass tags / Gaoyuan Song, Christian Montes, and Justin W. Walley
  • Optimizing shotgun proteomics analysis for a confident protein identification and quantitation in orphan plant species; the case of holm oak (Quercus ilex) / Isabel Gómez-Gálvez, Rosa Sánchez-Lucas, Bonoso San-Eufrasio, Luis Enrique Rodríguez de Francisco, Ana M. Maldonado-Alconada, Carlos Fuentes-Almagro, and Mari Angeles Castillejo
  • Combining targeted and untargeted data acquisition to enhance quantitative plant proteomics experiments / Gene Hart-Smith
  • A phosphoproteomic analysis pipeline for peels of tropical fruits / Janet Juarez-Escobar, José M. Elizalde-Contreras, Víctor M. Loyola-Vargas, and Eliel Ruiz-May
  • Label-free quantitative phosphoproteomics for algae / Megan M. Ford, Sheldon R. Lawrence II, Emily G. Werth, Evan W. McConnell, and Leslie M. Hicks
  • Targeted quantification of phosphopeptides by parallel reaction monitoring (PRM) / Sara Christina Stolze and Hirofumi Nakagami
  • Enrichment of N-linked glycopeptides and their identification by complementary fragmentation techniques / Eduardo Antonio Ramirez-Rodriguez and Joshua L. Heazlewood
  • High-resolution lysine acetylome profiling by offline fractionation and immunoprecipitation / Jonas Giese, Ines Lassowskat, and Iris Finkemeier
  • A versatile workflow for the identification of protein-protein interactions using GFP-Trap beads and mass spectrometry-based label-free quantification / Guillaume Née, Priyadarshini Tilak, and Iris Finkemeier
  • In vivo cross-linking to analyze transient protein-protein interactions / Heidi Pertl-Obermeyer and Gerhard Obermeyer
  • Proteome analysis of 14-3-3 targets in tomato fruit tissues / Yongming Luo, Yu Lu, Junji Yamaguchi, and Takeo Sato
  • The use of proteomics in search of allele-specific proteins in (allo) polyploid crops / Sebastien Christian Carpentier
  • Methods for optimization of protein extraction and proteogenomic mapping in sweet potato / Thualfeqar Al-Mohanna, Norbert T. Bokros, Nagib Ahsan, George V. Popescu, and Sorina C. Popescu
  • In silico analysis of class III peroxidases: hypothetical structure, ligand binding sites, posttranslational modifications, and interaction with substrates / Sabine Lüthje and Kalaivani Ramanathan
  • MALDI mass spectrometry imaging of peptides in Medicago truncatula root nodules / Caitlin Keller, Erin Gemperline, and Lingjun Li
  • Cystatin activity-based protease profiling to select protease inhibitors useful in plant protection / Marie-Claire Goulet, Frank Sainsbury, and Dominique Michaud
  • A pipeline for the metabolic pathway reconstruction in plant orphan species / Cristina López-Hidalgo, Mónica Escandón, Luis Valledor, and Jesus V. Jorrin-Novo
  • Detection of plant low-abundance proteins by means of combinatorial peptide ligand library methods / Egisto Boschetti and Pier Giorgio Righetti
  • iTRAQ-based proteomic analysis of rice grains / Marouane Baslam, Kentaro Kaneko, and Toshiaki Mitsui

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