Induced pluripotent stem (iPS) cells : methods and protocols

書誌事項

Induced pluripotent stem (iPS) cells : methods and protocols

edited by Andras Nagy, Kursad Turksen

(Methods in molecular biology / John M. Walker, series editor, 2454)(Springer protocols)

Humana Press, c2022

2nd ed

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注記

Includes bibliographical references and index

内容説明・目次

内容説明

This extensive new edition presents protocols reflecting the great strides made in the study of induced pluripotent stem (iPS) cells. The collection explores new and improved methods for the generation, expansion, and maintenance of iPS cells from different tissue types, characterization of their differentiation pathways along different lineages, and their potential utility in tissue repair and regeneration. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Comprehensive and up-to-date, Induced Pluripotent Stem (iPS) Cells: Methods and Protocols, Second Edition aims to arm stem cell biologists, both novice and expert, with invaluable protocols that are currently being used in various laboratories around the world.

目次

1. Human Induced Pluripotent Stem Cell (iPSC) Handling Protocols: Maintenance, Expansion, and Cryopreservation Davide Marotta, Chandrika Rao, and Valentina Fossati 2. Generation of Induced Pluripotent Stem Cells from Human Bone Marrow-Derived Mesenchymal Stem Cells Duygu Koyuncu Irmak and Erdal Karaoz 3. Analysis of Clonal Composition in Human iPSC and ESC and Derived 2D and 3D Differentiated Cultures Bernat del Olmo, Daria Merkurjev, Likun Yao, Mel lina Pinsach-Abuin, Ivan Garcia-Bassets, and Angels Almenar-Queralt 4. Culturing Human Pluripotent Stem Cells on Micropatterned Silicon Surfaces Varvara Chalmantzi, Chara Simitzi, Angelos Papadopoulos, Eleni Bagli, Carol Murphy, Emmanuel Stratakis, and Theodore Fotsis 5. Porcine iPSC Generation: Testing Different Protocols to a Successful Application Oriol Iborra-Egea, Daina Martinez-Falguera, Santiago Roura, Antoni Bayes-Genis, Angel Raya, and Carolina Galvez-Monton 6. Efficient High-Density hiPSCs Expansion in Simple Dialysis Device Fuad Gandhi Torizal, Hyunjin Choi, Marie Shinohara, and Yasuyuki Sakai 7. Expanding the Differentiation Potential of Already-Established Pluripotent Stem Cells Jose Gonzalez-Martinez and Marcos Malumbres 8. Generation of Quiescent Cardiac Fibroblasts Derived from Human Induced Pluripotent Stem Cells Hao Zhang, Mengcheng Shen, and Joseph C. Wu 9. Inductive Co-Culture Differentiation of Induced Pluripotent Stem Cells into Cardiomyocytes Axel J. Chu and Chinten James Lim 10. 3D Microwell Platform for Cardiomyocyte Differentiation of Human Pluripotent Stem Cells Mariana A. Branco, Tiago P. Dias, Joao P. Cotovio, Carlos A.V. Rodrigues, Tiago G. Fernandes, Joaquim M.S. Cabral, and Maria Margarida Diogo 11. Scalable Generation of Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes Sarkawt Hamad, Daniel Derichsweiler, Jurgen Hescheler, and Kurt Pfannkuche 12. Application of Human Induced Pluripotent Stem Cell Technology for Cardiovascular Regenerative Pharmacology Qasim A. Majid, Barbara Orsolits, Lotta Pohjolainen, Zsofia Kovacs, Gabor Foeldes, and Virpi Talman 13. Efficient and Safe Method of Generating Induced Pluripotent Stem Cells from Human Skin Fibroblasts and Subsequent Differentiation into Functional Cardiomyocytes Sheeja Rajasingh, Vinoth Sigamani, Narasimman Gurusamy, and Johnson Rajasingh 14. An Optical-Flow-Based Method to Quantify Dynamic Behavior of Human Pluripotent Stem Cell-Derived Cardiomyocytes in Disease Modeling Platforms Mohammad Izadifar, Tunde Berecz, Agota Apati, and Andras Nagy 15. Production of Innervated Skeletal Muscle Fibers Using Human Induced Pluripotent Stem Cells Megane Delourme, Natacha Broucqsault, Kilian Mazaleyrat, and Frederique Magdinier 16. Generation of Human Neural Progenitors from Blood Samples by Interrupted Reprogramming Eszter Szabo, Flora Juhasz, Laszlo Homolya, Zsuzsa Erdei, and Agota Apati 17. Robust and Highly Efficient Protocol for Differentiation of Human Pluripotent Stem Cells into Mesenchymal Stem Cells Manale Karam and Essam M. Abdelalim 18. The Development of Tissue Engineering Scaffolds Using Matrix from iPS-Reprogrammed Fibroblasts Francesco Santarella, Fergal J. O'Brien, Jonathan A. Garlick, and Cathal J. Kearney 19. 3D Organoid Culture Using Skin Keratinocytes Derived from Human Induced Pluripotent Stem Cells Tomoko Miyake and Mikio Shimada 20. Pluripotent Stem Cell Differentiation towards Functional Basal Stratified Epithelial Cells Eduardo Soares and Huiqing Zhou 21. Serum-Free Production of Three-Dimensional Hepatospheres from Pluripotent Stem Cells Hassan Rashidi and David C. Hay 22. The Differentiation of Human Induced Pluripotent Stem Cells into Podocytes In Vitro Andrea F. Wise, Sheetal Saini, and Sharon D. Ricardo 23. A Method for Encapsulation and Transplantation into Diabetic Mice of Human Induced Pluripotent Stem Cells (hiPSC)-Derived Pancreatic Progenitors Luiza Ghila, Thomas Aga Legoy, and Simona Chera 24. Highly Efficient Differentiation of Human Pluripotent Stem Cells into Pancreatic Progenitors Co-Expressing PDX1 and NKX6.1 Bushra Memon and Essam M. Abdelalim 25. Derivation of Three Dimensional Human Induced Pluripotent Stem Cell Derived Vocal Fold Mucosa for Clinical and Pharmacological Applications Lungova Vlasta and Susan L. Thibeault 26. Generation of Human Induced Pluripotent Stem Cells Using Endothelial Progenitor Cells Derived from Umbilical Cord Blood and Adult Peripheral Blood Xiugong Gao, Jeffrey J. Yourick, and Robert L. Sprando 27. Development of a Blood Brain Barrier Permeability Assay Using Human Induced Pluripotent Stem Cell Derived Brain Endothelial Cells Claudie Charlebois, Jez Huang, Caroline Sodja, Maria Ribecco-Lutkiewicz, Ewa Baumann, Danica B. Stanimirovic, and Anna Jezierski 28. Revised "hPSC-Sac Method" for Simple and Efficient Differentiation of Human Pluripotent Stem Cells to Hematopoietic Progenitor Cells Akinori Yuzuriha and Koji Eto 29. Efficient Generation of iPSC-Derived Hematoendothelial Progenitors and Specification toward T-Cell Lineage Siriwal Suwanpitak, Nutchanawan Promnakhon, Ratchapong Netsrithong, and Methichit Wattanapanitch 30. Derivation and Characterization of Mesenchymal Stem Cells from iPS Cells Qingguo Zhao and Fei Liu 31. Human Pluripotent Stem Cell Differentiation to Microglia Laraib Ijaz, Madhura Nijsure, and Valentina Fossati 32. Human Induced Pluripotent Stem Cell-Derived Microglia (hiPSC-Microglia) Amanda McQuade and Mathew Blurton-Jones 33. Isolation and Culture of Human Induced Pluripotent Stem Cell-Derived Cerebral Organoid Cells Yasheng Yan, Thiago Arzua, Sarah Logan, and Xiaowen Bai 34. A Simple Method for Generating, Clearing, and Imaging Pre-Vascularized 3D Adipospheres Derived from Human iPS Cells Xi Yao and Christian Dani 35. A Method for In Vitro Fabrication of Hybrid Bone/Cartilage Tissue Using Mouse Induced Pluripotent Stem Cells Phoonsuk Limraksasin and Hiroshi Egusa 36. Differentiation of Human Induced Pluripotent Stem Cells (hiPSC) into Endothelial- Type Cells and Establishment of an In Vitro Blood-Brain Barrier Model Yuan Li, Georg C. Terstappen, and Wandong Zhang 37. CRISPR/Cas9-Mediated Introduction of Specific Heterozygous Mutations in Human Induced Pluripotent Stem Cells Karina O. Brandao, Catarina Grandela, Loukia Yiangou, Christine L. Mummery, and Richard P. Davis 38. CRISPR/Cas9-Mediated Gene Knock-Out and Knock-In Human iPSCs Paolo Petazzi, Pablo Menendez, and Ana Sevilla 39. Generation of Monoclonal iPSC Lines with Stable Cas9 Expression and High Cas9 Activity JinQi Liao, Guangqian Zhou, and Yan Zhou 40. CRISPR/Cas9-Mediated Genome Editing to Generate Clonal iPSC Lines Carla Sanjurjo-Soriano, Nejla Erkilic, Daria Mamaeva, and Vasiliki Kalatzis 41. CRISPR/Cas9 Ribonucleoprotein Complex-Mediated Efficient B2M Knockout in Human Induced Pluripotent Stem Cells (iPSCs) Nontaphat Thongsin and Methichit Wattanapanitch 42. Embryonal Carcinoma and Glioblastoma Cell Lines Derived from Monkey Induced Pluripotent Stem Cells Hirohito Ishigaki and Yasushi Itoh 43. Methods for Isolation and Reprogramming of Various Somatic Cell Sources into iPSCs Shunit Neeman-Egozi, Polina Baskin, and Ofer Binah 44. The Characteristics of Human iPS Cells and siRNA Transfection under Hypoxia Kouji Sugimoto and Yoshihiko Hayashi 45. mRNA-Based Reprogramming under Xeno-Free and Feeder-Free Conditions Jakob Jeriha, Nikola Kolundzic, Preeti Khurana, Andrea Perez-Dominguez, and Dusko Ilic 46. Non-Modified RNA-Based Reprogramming of Human Dermal Fibroblasts into Induced Pluripotent Stem Cells Immacolata Belviso, Franca Di Meglio, Veronica Romano, Stefania Montagnani, and Clotilde Castaldo 47. Efficient Induction of Primate iPS Cells Using a Combination of RNA Transfection and Chemical Compounds Toshiaki Watanabe and Erika Sasaki 48. Generation and Cultivation of Transgene-Free Macaque and Baboon iPSCs under Chemically-Defined Conditions Ignacio Rodriguez-Polo, Michael Stauske, and Rudiger Behr 49. Generation of Marmoset Monkey iPSCs with Self-Replicating VEE-mRNAs in Feeder-Free Conditions Stoyan G. Petkov and Rudiger Behr 50. Differentiation of Human Induced Pluripotent Stem Cells into Definitive Endoderm Using Simple Dialysis Culture Device Hyun Jin Choi, Fuad Gandhi Torizal, Marie Shinohara, and Yasuyuki Sakai 51. Detecting and Modulating ER Stress to Improve Generation of Induced Pluripotent Stem Cells Alejandro Fuentes-Iglesias, Cristina Ameneiro, Diana Guallar, and Miguel Fidalgo 52. Gene Editing in Human Induced Pluripotent Stem Cells Using Doxycycline-Inducible CRISPR-Cas9 System Vasanth Thamodaran, Sonam Rani, and Shaji R. Velayudhan 53. Derivation of Clinical-Grade Induced Pluripotent Stem Cell Lines from Erythroid Progenitor Cells in Xenofree Conditions Gurbind Singh, Kannan V. Manian, Chitra Premkumar, Alok Srivastava, Dolly Daniel, and Shaji R. Velayudhan 54. Generation of Murine Induced Pluripotent Stem Cells through Transposon-Mediated Reprogramming Thirumala R. Talluri, Dharmendra Kumar, and Wilfried A. Kues 55. Human Pluripotent Stem Cells for High-Throughput Drug Screening and Characterization of Small Molecules Seungmi Ryu, Pei-Hsuan Chu, Claire Malley, John Braisted, Pinar Ormanoglu, Ruili Huang, Misha Itkin, Zina Itkin, Paul Shinn, Carleen Klumpp-Thomas, Sam Michael, Carlos A. Tristan, Anton Simeonov, and Ilyas Singec

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