深海 小林 薫 FUKAMI (KOBAYASHI) Kaoru

ID:9000002735966

理化学研究所バイオリソースセンター RIKEN BioResource Center (2010年 CiNii収録論文より)

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Articles:  1-17 of 17

  • Development of Brassica rapa cDNA resources for the systematic consolidation of Brassica and Arabidopsis  [in Japanese]

    ABE Hiroshi , SASAKI Issei , HATAKEYAMA Katsunori , NARUSAKA Mari , FUKAMI KOBAYASHI Kaoru , NARUSAKA Yoshihiro , KOBAYASHI Masatomo , Kobayashi Masatomo

    Abstracts of Meeting of the CSSJ 79, 356-357, 2010-03-30

    J-STAGE 

  • NBRP databases: databases of biological resources in Japan

    Yamazaki Yukiko , Akashi Ryo , Banno Yutaka , Endo Takashi , Ezura Hiroshi , Fukami-Kobayashi Kaoru , Inaba Kazuo , Isa Tadashi , Kamei Katsuhiko , Kasai Fumie , Kobayashi Masatomo , Kurata Nori , Kusaba Makoto , Matuzawa Tetsuro , Mitani Shohei , Nakamura Taro , Nakamura Yukio , Nakatsuji Norio , Naruse Kiyoshi , Niki Hironori , Nitasaka Eiji , Obata Yuichi , Okamoto Hitoshi , Okuma Moriya , Sato Kazuhiro , Serikawa Tadao , Shiroishi Toshihiko , Sugawara Hideaki , Urushibara Hideko , Yamamoto Masatoshi , Yaoita Yoshio , Yoshiki Atsushi , Kohara Yuji

    The National BioResource Project (NBRP) is a Japanese project that aims to establish a system for collecting, preserving and providing bioresources for use as experimental materials for life science r …

    Nucleic Acids Research 38, D26-D32, 2010-01

    IR  DOI  Cited by (1)

  • Development of Brassica rapa cDNA resources for the systematic consolidation of Brassica and Arabidopsis

    Abe Hiroshi , Sasaki Issei , Narusaka Mari , Fukami-Kobayashi Kaoru , Hatakeyama Katsunori , Narusaka Yoshihiro , Kobayashi Masatomo

    In 2000, the entire genome sequence of Arabidopsis has been completely characterized. Genome information creates the huge quantities of useful and desirable information by several omics-based analyses …

    Plant and Cell Physiology Supplement 2008(0), S0062-S0062, 2008

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  • SABRE (Systematic consolidation of Arabidoposis and other Botanical REsource): connecting plant cDNA resources with genomic information of Arabidopsis

    Fukami-Kobayashi Kaoru , Tamura Takuro , Oota Satoshi , Kobayashi Masatomo

    The SABRE DB (http://saber.epd.brc.riken.jp/sabre7/SABRE0101.cgi) provides organized information about plant resources of RIKEN BRC. In SABRE, the BRC plant gene resources (derived from Arabidopsis, & …

    Plant and Cell Physiology Supplement 2008(0), 0986-0986, 2008

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  • Informatics of plant resources in RIKEN BRC

    Kobayashi Masatomo , Abe Hiroshi , Iuchi Satoshi , Kobayashi Toshihiro , Amano Kou , Oota Satoshi , Fukami-Kobayashi Kaoru

    RIKEN BRC is engaged in the National BioResource Project to preserve and distribute Arabidopsis seeds, plant cultured cells and plant DNA materials in order to promote plant science in the world. In t …

    Plant and Cell Physiology Supplement 2008(0), 1009-1009, 2008

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  • Self-organizing clustering: non-hierarchical clustering for large scale DNA sequence data

    AMANO KOU , ICHIKAWA HIROAKI , NAKAMURA HIDEMITSU , NUMA HISATAKA , FUKAMI-KOBAYASHI KAORU , NAGAMURA YOSHIAKI , ONODERA NATSUO

    Recently, clustering has been recognized as an important and fundamental method that analyzes and classifies large-scale sequence data to provide useful information. We developed a novel clustering me …

    情報処理学会論文誌. SIG 48(5), 49-53, 2007-03

  • Self-organizing Clustering: Non-hierarchical Clustering for Large Scale DNA Sequence Data

    Amano Kou , Ichikawa Hiroaki , Nakamura Hidemitsu , Numa Hisataka , Fukami-Kobayashi Kaoru , Nagamura Yoshiaki , Onodera Natsuo

    Recently, clustering has been recognized as an important and fundamental method that analyzes and classifies large-scale sequence data to provide useful information. We developed a novel clustering me …

    Information and Media Technologies 2(2), 523-527, 2007

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  • Self-organizing Clustering: Non-hierarchical Clustering for Large Scale DNA Sequence Data

    Amano Kou , Ichikawa Hiroaki , Nakamura Hidemitsu , Numa Hisataka , Fukami-Kobayashi Kaoru , Nagamura Yoshiaki , Onodera Natsuo

    Recently, clustering has been recognized as an important and fundamental method that analyzes and classifies large-scale sequence data to provide useful information. We developed a novel clustering me …

    IPSJ Digital Courier 3, 193-197, 2007

    IR  J-STAGE 

  • Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones

    Imanishi Tadashi , Itoh Takeshi , Suzuki Yutaka , O'Donovan Claire , Fukuchi Satoshi , Koyanagi Kanako O. , Barrero Roberto A. , Tamura Takuro , Yamaguchi-Kabata Yumi , Tanino Motohiko , Yura Kei , Miyazaki Satoru , Ikeo Kazuho , Homma Keiichi , Kasprzyk Arek , Nishikawa Tetsuo , Hirakawa Mika , Thierry-Mieg Jean , Thierry-Mieg Danielle , Ashurst Jennifer , Jia Libin , Nakao Mitsuteru , Thomas Michael A. , Mulder Nicola , Karavidopoulou Youla , Jin Lihua , Kim Sangsoo , Yasuda Tomohiro , Lenhard Boris , Eveno Eric , Suzuki Yoshiyuki , Yamasaki Chisato , Takeda Jun-ichi , Gough Craig , Hilton Phillip , Fujii Yasuyuki , Sakai Hiroaki , Tanaka Susumu , Amid Clara , Bellgard Matthew , Bonaldo Maria de Fatima , Bono Hidemasa , Bromberg Susan K. , Brookes Anthony J. , Bruford Elspeth , Carninci Piero , Chelala Claude , Couillault Christine , Souza Sandro J. de , Debily Marie-Anne , Devignes Marie-Dominique , Dubchak Inna , Endo Toshinori , Estreicher Anne , Eyras Eduardo , Fukami-Kobayashi Kaoru , R. Gopinath Gopal , Graudens Esther , Hahn Yoonsoo , Han Michael , Han Ze-Guang , Hanada Kousuke , Hanaoka Hideki , Harada Erimi , Hashimoto Katsuyuki , Hinz Ursula , Hirai Momoki , Hishiki Teruyoshi , Hopkinson Ian , Imbeaud Sandrine , Inoko Hidetoshi , Kanapin Alexander , Kaneko Yayoi , Kasukawa Takeya , Kelso Janet , Kersey Paul , Kikuno Reiko , Kimura Kouichi , Korn Bernhard , Kuryshev Vladimir , Makalowska Izabela , Makino Takashi , Mano Shuhei , Mariage-Samson Regine , Mashima Jun , Matsuda Hideo , Mewes Hans-Werner , Minoshima Shinsei , Nagai Keiichi , Nagasaki Hideki , Nagata Naoki , Nigam Rajni , Ogasawara Osamu , Ohara Osamu , Ohtsubo Masafumi , Okada Norihiro , Okido Toshihisa , Oota Satoshi , Ota Motonori , Ota Toshio , Otsuki Tetsuji , Piatier-Tonneau Dominique , Poustka Annemarie , Ren Shuang-Xi , Saitou Naruya , Sakai Katsunaga , Sakamoto Shigetaka , Sakate Ryuichi , Schupp Ingo , Servant Florence , Sherry Stephen , Shiba Rie , Shimizu Nobuyoshi , Shimoyama Mary , Simpson Andrew J. , Soares Bento , Steward Charles , Suwa Makiko , Suzuki Mami , Takahashi Aiko , Tamiya Gen , Tanaka Hiroshi , Taylor Todd , Terwilliger Joseph D. , Unneberg Per , Veeramachaneni Vamsi , Watanabe Shinya , Wilming Laurens , Yasuda Norikazu , Yoo Hyang-Sook , Stodolsky Marvin , Makalowski Wojciech , Go Mitiko , Nakai Kenta , Takagi Toshihisa , Kanehisa Minoru , Sakaki Yoshiyuki , Quackenbush John , Okazaki Yasushi , Hayashizaki Yoshihide , Hide Winston , Chakraborty Ranajit , Nishikawa Ken , Sugawara Hideaki , Tateno Yoshio , Chen Zhu , Oishi Michio , Tonellato Peter , Apweiler Rolf , Okubo Kousaku , Wagner Lukas , Wiemann Stefan , Strausberg Robert L. , Isogai Takao , Auffray Charles , Nomura Nobuo , Gojobori Takashi , Sugano Sumio

    The human genome sequence defines our inherent biological potential; the realization of the biology encoded therein requires knowledge of the function of each gene. Currently, our knowledge in this ar …

    PLoS Biology 2(6), 856-875, 2004-06

    IR  DOI  Cited by (3)

  • Construction and Characterization of Chimeric Proteins Composed of Type-1 and Type-2 Periplasmic Binding Proteins MglB and ArgT

    KASHIWAGI Kenji , FUKAMI (KOBAYASHI) Kaoru , SHIBA Kiyotaka , NISHIKAWA Ken

    The respective type-1 and type-2 periplasmic binding proteins (PBPs) MglB and ArgT are believed to have evolved from a common ancestor into siblings showing topological differences in their main chain …

    Bioscience, Biotechnology, and Biochemistry 68(4), 808-813, 2004-04-23

    J-STAGE  References (11)

  • Characterization of Folding Pathways of the Type-1 and Type-2 Periplasmic Binding Proteins MgIB and ArgT

    KASHIWAGI Kenji , SHIBA Kiyotaka , FUKAMI-KOBAYASHI Kaoru , NODA Tetsuo , NISHIKAWA Ken , NOGUCHI Hiroshi

    Journal of Biochemistry 133(3), 371-376, 2003-03-01

    Ichushi Web  References (39) Cited by (1)

  • Characterization of Folding Pathways of the Type-1 and Type-2 Periplasmic Binding Proteins MglB and ArgT

    Kashiwagi Kenji , Shiba Kiyotaka , Fukami-Kobayashi Kaoru , Noda Tetsuo , Nishikawa Ken , Noguchi Hiroshi

    The family of periplasmic binding proteins (PBPs) is believed to have arisen from a common ancestor and to have differentiated into two types. At first approximation, both types of PBPs have the same …

    The Journal of Biochemistry 133(3), 371-376, 2003

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  • シリーズ あなたにも役立つバイオインフォマティクス(7)アミノ酸配列の保存領域から蛋白質を知る  [in Japanese]

    深海-小林 薫

    Protein,nucleic acid and enzyme 46(14), 2098-2103, 2001-11

  • CAMUS DB for Amino Acid Sequence Data

    Misu Sadahiko , Iizu Takayasu , Kawanishi Yuichi , Fukami(Kobayashi) Kaoru , Saitou Naruya

    Genome Informatics 12, 502-503, 2001

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  • A new module organization of hemoglobin  [in Japanese]

    SHIONYU M. , FUKAMI-KOBAYASHI K. , MIZUTANI M. , YURA K. , GO M.

    Biophysics 37, S59, 1997-10

  • SAKURA: A New Data Submission System of DDBJ to Meet Users' Needs in the Age of Mass Production of DNA Sequences

    Yamamoto Hikaru , Ikeo Kazuho , Tamura Takuro , Isono Katsumi , Gojobori Takashi , Sugawara Hideaki , Nishikawa Ken , Saitou Naruya , Imanishi Tadashi , Fukami(Kobayashi) Kaoru

    Genome Informatics 7, 204-205, 1996

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  • Development of New DDBJ DNA Sequence Database with Data Annotation Tool Yamato II

    Koike T. , Fukami(Kobayashi) K. , Ikeo K. , Gojobori T. , Okayama T. , Ishii J. , Mizunuma T. , Tamura T. , Tateno Y. , Sugawara H. , Nishikawa K. , Imanishi T.

    As the molecular biology has made a rapid progress these years, there has been a great number of changes required of the methodology for maintaining and utilizing DNA sequence data. For example, annot …

    Genome Informatics 7, 157-165, 1996

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