Basic characterization

Author(s)

    • Xu, Ying
    • Xu, Dong
    • Liang, Jie

Bibliographic Information

Basic characterization

(Biological and medical physics, biomedical engineering, . Computational methods for protein structure prediction and modeling / Ying Xu, Dong Xu, and Jie Liang (eds.) ; v. 1)

Springer, c2007

Available at  / 9 libraries

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Note

"AIP Press"--Spine, back cover

Includes bibliographical references and index

Description and Table of Contents

Description

Volume One of this two-volume sequence focuses on the basic characterization of known protein structures, and structure prediction from protein sequence information. Eleven chapters survey of the field, covering key topics in modeling, force fields, classification, computational methods, and structure prediction. Each chapter is a self contained review covering definition of the problem and historical perspective; mathematical formulation; computational methods and algorithms; performance results; existing software; strengths, pitfalls, challenges, and future research.

Table of Contents

A Historical Perspective and Overview of Protein Structure Prediction.- Empirical Force Fields.- Knowledge-Based Energy Functions for Computational Studies of Proteins.- Computational Methods for Domain Partitioning of Protein Structures.- Protein Structure Comparison and Classification.- Computation of Protein Geometry and Its Applications: Packing and Function Prediction.- Local Structure Prediction of Proteins.- Protein Contact Map Prediction.- Modeling Protein Aggregate Assembly and Structure.- Homology-Based Modeling of Protein Structure.- Modeling Protein Structures Based on Density Maps at Intermediate Resolutions.

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