Globins and other nitric oxide-reactive proteins
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書誌事項
Globins and other nitric oxide-reactive proteins
（Methods in enzymology / editors in chief, Sidney P. Colowick, Nathan O. Kaplan, v. 436-437）
Elsevier Academic Press, c2008
- pt. A
- pt. B
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Includes bibliographical references and indexes
内容説明・目次
- 巻冊次
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pt. A ISBN 9780123742773
内容説明
The critically acclaimed laboratory standard for more than forty years, Methods in Enzymology is one of the most highly respected publications in the field of biochemistry. Since 1955, each volume has been eagerly awaited, frequently consulted, and praised by researchers and reviewers alike. Now with over 400 volumes (all of them still in print), the series contains much material still relevant today-truly an essential publication for researchers in all fields of life sciences. Methods in Enzymology is now available online at ScienceDirect - full-text online of volumes 1 onwards. For more information about the Elsevier Book Series on ScienceDirect Program, please visit: http://www.info.sciencedirect.com/bookseries/This volume features methods for the study of globin and other nitric oxide-reactive proteins.
目次
Section I. Nitric Oxide: Chemical and Analytical Methods
Chapter 1
The Chemistry of Nitric Oxide and Related Species
Martin H. Hughes
Chapter 2
Delivery of nitric oxide for analysis of the function of cytochrome c'.
Lindsay J. Cole, Wilhelmina M. Huston, and James W.B. Moir
Chapter 3
The preparation and purification of NO gas and the use of NO releasers. The application of NO donors and other agents of nitrosative stress in biological systems
Rubina G. Aga and Martin N. Hughes
Chapter 4
The Chemistry of Peroxynitrite - Implications for Biological Activity
Sara Goldstein and Gabor Merenyi
Chapter 5
Nitric Oxide (NO) Selective Electrodes
Ian R. Davies, Xueji Zhang
Chapter 6
NO, N2O and O2 Reaction Kinetics: Scope and Limitations of the Clark Electrode
L.A.M. Pouvreau, M. J. F. Strampraad, S. Van Berloo, J. H. Kattenberg and S. de Vries
Chapter 7
Chemiluminescence quantification of Nitric oxide and its derivatives in liquid samples
Jay R. Laver, Tania M. Stevanin, Robert C. Read
Section II. Bacterial and Archaeal Hemoglobins
Chapter 8
Interactions of nitric oxide with hemoglobin: from microbes to man
Michael Angelo, Alfred Hausladen and Jonathan S. Stamler
Chapter 9
Expression and purification of E. coli Hmp
Robert K. Poole
Chapter 10
Structural studies on flavohemoglobins
Andrea Ilari and Alberto Boffi
Chapter 11
Flavohemoglobin of Staphylococcus aureus
Ligia S. Nobre, Vera L. Goncalves and Ligia M. Saraiva
Chapter 12
Assay and Characterization of the Nitric Oxide Dioxygenase Activity of (Flavo)Hemoglobins
Paul R. Gardner
Chapter 13
Globin Interactions with Lipids and Membranes
Antonio Di Giulio and Alessandra Bonamore
Chapter 14
Assessment of Biotechnologically Relevant Characteristics of Heterologous Hemoglobins in Escherichia coli
Pauli T. Kallio, Christian J. T. Bollinger, Taija Koskenkorva, and Alexander D. Frey
Chapter 15
Applications of the Vitreoscilla hemoglobin (VHb) gene (vgb) for improved microbial fermentation processes
Xiao-Xing WEI, Guo-Qiang CHEN
Chapter 16
Expression and Purification of Cgb and Ctb, the NO-Inducible Globins of the Foodborne Bacterial Pathogen Campylobacter jejuni
James L. Pickford, Laura Wainwright, Guanghui Wu, Robert K. Poole
Chapter 17
Mapping Heme-Ligand Tunnel in Group I Truncated(2/2) Hemoglobins
Alessandra Pesce, Mario Milani, Marco Nardini and Martino Bolognesi
Chapter 18
Scavenging of reactive nitrogen species by mycobacterial truncated hemoglobins
Paolo Ascenzi and Paolo Visca
Section III. Other Hemoglobins
Chapter 19
Expression, purification and crystallisation of neuro-and cytoglobin
Sylvia Dewilde, Kirsten Mees, Laurent Coger, Christophe Lechauve, Michael C. Marden, Alexandra Pesce, Martino Bolognesi, Luc Monees
Chapter 20
Measurement of distal histidine coordination equilibrium and kinetics in hexacoordinate hemoglobins.
Benoit J. Smagghe, Puspita Halder, and Mark S. Hargrove
Chapter 21
Purification of Class 1 Plant Hemoglobins and Examination of their Functional Properties
Abir U. Igamberdiev and Robert D. Hill
Chapter 22
Use of in silico (computer) methods to predict and analyze the tertiary structure of plant hemoglobins
Sabarinathan Kuttalingam Gopalasubramaniam, Veronica Garrocho-Villegas, Genoveva Bustos Rivera, Nina Pastor and Raul Arredondo-Peter
Chapter 23
A Self-induction Method to Produce High Quantities of Recombinant Functional Flavo-Leghemoglobin Reductase.
Estibaliz Urarte, Inigo Auzmendi, Selene Rol, Idoia Ariz, Pedro Aparicio-Tejo, Raul Arredondo-Peter and Jose F. Moran
Chapter 24
Spectroscopic and crystallographic characterization of bis-histidyl adducts in tetrameric hemoglobins
Alessandro Vergara, Luigi Vitagliano, Cinzia Verde, Guido di Prisco, Lelio Mazzarella
Chapter 25
Dinitrosyl Iron Complexes Bound with Haemoglobin as Markers of Oxidative Stress
Konstantin B. Shumaev, Olga V. Kosmachevskaya, Alexandr A. Timoshin, Anatoly F. Vanin and Alexey F. Topunov
Chapter 26
Linked analysis of large cooperative, allosteric systems: the case of the giant HBL hemoglobins
Nadja Hellmann, Roy E. Weberb and Heinz Decker
Chapter 27
Mass Mapping of Large Globin Complexes by Scanning Transmission Electron Microscopy
Joseph S. Wall, Martha N. Simon, Beth Y. Lin, Serge N. Vinogradov
Chapter 28
Mini-Hemoglobins from Nemertean Worms
Thomas L. Vandergon and Austen F. Riggs
Chapter 29
Comparative and Evolutionary Genomics of Globin Genes in Fish
Enrico Negrisolo, Luca Bargelloni, Tomaso Patarnello, Catherine Ozouf-Costaz, Eva Pisano, Guido di Prisco, Cinzia Verde
Chapter 30
Inferring Evolution of Fish Proteins: The Globin Case Study
Agnes Dettai, Guideo de Prisco, Guillaume Lecointre, Elio Parisi, Cinzia Verde
Chapter 31
Tracing Globin Phylogeny Using PSI-BLAST Searches
Based on Groups of Sequences
Serge N. Vinogradov
- 巻冊次
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pt. B ISBN 9780123742780
内容説明
The critically acclaimed laboratory standard for more than forty years, Methods in Enzymology is one of the most highly respected publications in the field of biochemistry. Since 1955, each volume has been eagerly awaited, frequently consulted, and praised by researchers and reviewers alike. Now with over 400 volumes (all of them still in print), the series contains much material still relevant today-truly an essential publication for researchers in all fields of life sciences. Methods in Enzymology is now available online at ScienceDirect - full-text online of volumes 1 onwards. For more information about the Elsevier Book Series on ScienceDirect Program, please visit: http://www.info.sciencedirect.com/bookseries/ This volume is the second of two planned volumes on the topic of globin and other nitric oxide-reactive proteins.
目次
Section I. Nitric Oxide-Metabolising and Detoxifying Enzymes
Chapter 1
Structural Studies on Flavodiiron Proteins
Joao B. Vicente, Maria Armenia Carrondo, Miguel Teixeira and Carlos Frazao
Chapter 2
Biochemical, Spectroscopic and Thermodynamic Properties of Flavodiiron Proteins
Joao B. Vicente, Marta C. Justino, Vera L. Goncalves, Ligia M. Saraiva and Miguel Teixeira
Chapter 3
Kinetic Characterization of the Escherichia coli Nitric Oxide Reductase Flavorubredoxin
Joao B. Vicente, Francesca M. Scandurra, Elena Forte, Maurizio Brunori, Paolo Sarti, Miguel Teixeira and Alessandro Giuffre
Chapter 4
Escherichia coli cytochrome c-nitrite reductase NrfA
Thomas A. Clarke, Paul C. Mills, Susie R. Poock, Julea N. Butt1, Myles R. Cheesman, Jeffrey A. Cole, Jay C. D. Hinton, Andrew M. Hemmings, Gemma Kemp, Christopher Soederberg, Stephen Spiro, Jessica Van Wonderen, David J. Richardson
Chapter 5
The respiratory NO reductase (NorBC) from Paracoccus denitrificans
Sarah J. Field, Faye H. Thorndycroft, Andrey D. Matorin,
David J. Richardson and Nicholas J. Watmough
Chapter 6
Redox-controlled dinitrosyl formation at the diiron-oxo center of NorA
Rainer Cramm, Katja Strube
Chapter 7
Purification and functional analysis of fungal nitric oxide reductase cytochrome P450nor
Li Zhangand Hirofumi Shoun
Chapter 8
A Quantitative approach to nitric oxide inhibition of terminal oxidases of the respiratory chain
Maria G. Mason, Rebecca S. Holladay, Peter Nicholls, Mark Shepherd and Chris E. Cooper
Section II. Sensor Proteins
Chapter 9
Cloning, Expression, and Purification of the N-terminal Heme Binding Domain of the Globin-Coupled Sensors
Jennifer A. Saito, Tracey Allen K. Freitas, and Maqsudul Alam
Chapter 10
Oxygen-Sensing Histidine-Protein Kinases: Assays of Ligand-Binding and Turnover of Response-Regulator Substrates
Marie-Alda Gilles-Gonzalez, Gonzalo Gonzalez, Eduardo H. S. Sousa, and Jason Tuckerman
Chapter 11
Reactions of nitric oxide and oxygen with FNR (regulator of Fumarate and Nitrate Reduction), a global transcriptional regulator, during anaerobic growth of Escherichia coli
Jason C. Crack, Nick E. Le Brun, Andrew J. Thomson, Jeffrey Green and Adrian J. Jervis
Chapter 12
Genome wide identification of binding sites for the nitric oxide sensitive transcriptional regulator NsrR.
Sam Efromovich, David Grainger, Diane Bodenmiller, and Stephen Spiro.
Chapter 13
Methods in Enzymology: Globins and other NO-reactive proteins. Characterization of the NO-reactive transcriptional activator NorR.
Benoit D'Autreaux, Nick Tucker, Stephen Spiro and Ray Dixon
Section III. Advanced Spectroscopic Methods
Chapter 14
Hemoglobins from Mycobacterium tuberculosis and Campylobacter jejuni: A Comparative Study with Resonance Raman Spectroscopy
Changyuan Lu, Tsuyoshi Egawa, Masahiro Mukai, Robert K. Pooleand Syun-Ru Yeh
Chapter 15
The power of using continuous-wave and pulsed electron paramagnetic resonance methods for the structure analysis of the ferric forms and NO-ligated ferrous forms of globins.
Sabine Van Doorslaer and Filip Desmet
Chapter 16
Oxygen binding to haem proteins in solution, encapsulated in silica gels and in the crystalline state
Luca Ronda, Stefano Bruno, Serena Faggiano, Stefano Bettati and Andrea Mozzarelli
Chapter 17
Characterization of ligand migration mechanisms inside haemoglobins from the analysis of geminate rebinding kinetics
Stefania Abbruzzetti, Stefano Bruno, Serena Faggiano, Luca Ronda, Elena Grandi, Andrea Mozzarelli, Cristiano Viappiani
Chapter 18
Ligand Dynamics in Heme Proteins Observed by
Fourier Transform Infrared Spectroscopy at Cryogenic Temperatures
Karin Nienhaus, G. Ulrich Nienhaus
Chapter 19
Time-resolved x-ray crystallography of heme proteins
Vukica Srajer and William E. Royer, Jr
Chapter 20
Structural Dynamics of Myoglobin
Maurizio Brunori, Dominque Bourgeois and Beatrice Vallone
Chapter 21
Use of the Conjugate Peak Refinement Algorithm for Identification of Ligand Binding Pathways in Globins
Stephen D. Golden and Kenneth W. Olsen
Chapter 22
Finding gas migration pathways in proteins using implicit ligand sampling
Jordi Cohen, Kenneth W Olsen, and Klaus Schulten
Chapter 23
Identification of Ligand Binding Pathways in Truncated Hemoglobins Using Locally Enhanced Sampling Molecular Dynamics
Stephen D. Golden and Kenneth W. Olsen
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